Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BEST7003_RS11785 Genome accession   NZ_AP012496
Coordinates   2384448..2384783 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis BEST7003     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2379448..2389783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEST7003_RS11765 (BEST7003_2315) gcvT 2380040..2381128 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  BEST7003_RS11770 (BEST7003_2316) hepAA 2381570..2383243 (+) 1674 WP_004398544.1 SNF2-related protein -
  BEST7003_RS11775 (BEST7003_2317) yqhG 2383264..2384058 (+) 795 WP_003230200.1 YqhG family protein -
  BEST7003_RS11780 (BEST7003_2318) sinI 2384241..2384414 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  BEST7003_RS11785 (BEST7003_2319) sinR 2384448..2384783 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  BEST7003_RS11790 (BEST7003_2320) tasA 2384876..2385661 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  BEST7003_RS11795 (BEST7003_2321) sipW 2385725..2386297 (-) 573 WP_003246088.1 signal peptidase I SipW -
  BEST7003_RS11800 (BEST7003_2322) tapA 2386281..2387042 (-) 762 Protein_2360 amyloid fiber anchoring/assembly protein TapA -
  BEST7003_RS11805 (BEST7003_2324) yqzG 2387314..2387640 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  BEST7003_RS11810 (BEST7003_2325) spoIITA 2387682..2387861 (-) 180 WP_003230176.1 YqzE family protein -
  BEST7003_RS11815 (BEST7003_2326) comGG 2387932..2388306 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  BEST7003_RS11820 (BEST7003_2327) comGF 2388307..2388690 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  BEST7003_RS11825 (BEST7003_2328) comGE 2388716..2389063 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  BEST7003_RS11830 (BEST7003_2329) comGD 2389047..2389478 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  BEST7003_RS11835 (BEST7003_2330) comGC 2389468..2389764 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=65248 BEST7003_RS11785 WP_003226345.1 2384448..2384783(+) (sinR) [Bacillus subtilis BEST7003]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=65248 BEST7003_RS11785 WP_003226345.1 2384448..2384783(+) (sinR) [Bacillus subtilis BEST7003]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment