Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LVJ85_RS09340 Genome accession   NZ_CP091522
Coordinates   1898244..1898555 (-) Length   103 a.a.
NCBI ID   WP_244739194.1    Uniprot ID   -
Organism   Neisseria sp. Dent CA1/247     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1893244..1903555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ85_RS09320 (LVJ85_09320) rpoZ 1894343..1894549 (-) 207 WP_085363663.1 DNA-directed RNA polymerase subunit omega -
  LVJ85_RS09325 (LVJ85_09325) gmk 1894610..1895227 (-) 618 WP_115133060.1 guanylate kinase -
  LVJ85_RS09330 (LVJ85_09330) - 1895416..1895979 (+) 564 WP_085363665.1 adenine phosphoribosyltransferase -
  LVJ85_RS09335 (LVJ85_09335) - 1896157..1897785 (+) 1629 WP_244739184.1 ABC-F family ATPase -
  LVJ85_RS13470 - 1898004..1898126 (-) 123 Protein_1829 IS5/IS1182 family transposase -
  LVJ85_RS09340 (LVJ85_09340) comE 1898244..1898555 (-) 312 WP_244739194.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10924.73 Da        Isoelectric Point: 10.3202

>NTDB_id=652064 LVJ85_RS09340 WP_244739194.1 1898244..1898555(-) (comE) [Neisseria sp. Dent CA1/247]
MKKYLAGALALLWSAVSLAAVNINTATAEELKALPGIGPSKAAAIVEYRQHNGQFKSVDDLKNVKGIGEGILAKLRDEAT
VSGGKKPVKAAVPELKEKDKEKR

Nucleotide


Download         Length: 312 bp        

>NTDB_id=652064 LVJ85_RS09340 WP_244739194.1 1898244..1898555(-) (comE) [Neisseria sp. Dent CA1/247]
ATGAAGAAATATTTAGCGGGTGCGCTGGCTCTGTTGTGGTCGGCGGTATCGCTGGCGGCGGTGAATATCAATACGGCGAC
GGCGGAGGAATTGAAGGCGCTGCCGGGTATCGGTCCGTCGAAGGCGGCGGCGATTGTGGAATACCGTCAGCACAACGGCC
AGTTTAAGAGTGTCGACGATTTGAAGAATGTGAAGGGTATCGGCGAGGGTATTTTAGCCAAGCTGCGCGATGAGGCGACG
GTGAGCGGTGGCAAGAAACCGGTCAAAGCGGCGGTGCCGGAGCTGAAGGAGAAGGACAAAGAGAAGCGCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

56.566

96.117

0.544
  comE Neisseria gonorrhoeae MS11

56.566

96.117

0.544
  comE Neisseria gonorrhoeae MS11

56.566

96.117

0.544
  comE Neisseria gonorrhoeae MS11

56.566

96.117

0.544
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.852

78.641

0.408