Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LVJ85_RS04880 Genome accession   NZ_CP091522
Coordinates   1000030..1000836 (+) Length   268 a.a.
NCBI ID   WP_244741987.1    Uniprot ID   -
Organism   Neisseria sp. Dent CA1/247     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 995030..1005836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ85_RS04865 (LVJ85_04865) - 995201..998323 (+) 3123 WP_244741978.1 ABC transporter ATP-binding protein/permease -
  LVJ85_RS04870 (LVJ85_04870) - 998359..998811 (+) 453 WP_244741981.1 isoprenylcysteine carboxylmethyltransferase family protein -
  LVJ85_RS04875 (LVJ85_04875) rluD 998904..1000031 (-) 1128 WP_244741984.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LVJ85_RS04880 (LVJ85_04880) comL 1000030..1000836 (+) 807 WP_244741987.1 outer membrane protein assembly factor BamD Machinery gene
  LVJ85_RS04885 (LVJ85_04885) - 1001019..1001732 (+) 714 WP_244741991.1 phosphoglycolate phosphatase -
  LVJ85_RS04890 (LVJ85_04890) recX 1001839..1002288 (+) 450 WP_244743046.1 recombination regulator RecX Regulator
  LVJ85_RS04895 (LVJ85_04895) serC 1002385..1003491 (-) 1107 WP_244741994.1 phosphoserine transaminase -
  LVJ85_RS04900 (LVJ85_04900) - 1003802..1004572 (-) 771 WP_244743049.1 TatD family hydrolase -
  LVJ85_RS04905 (LVJ85_04905) - 1004682..1005200 (+) 519 WP_244741997.1 RDD family protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30914.78 Da        Isoelectric Point: 8.5443

>NTDB_id=652055 LVJ85_RS04880 WP_244741987.1 1000030..1000836(+) (comL) [Neisseria sp. Dent CA1/247]
MKKILLVISLGLALGGCAGTKGTIDKDAQITQDWSVEKLYAEAHDELNSSNYTRAIKLYEILESRFPNGRYAQQSQLDTA
YAHYKDDEPEKALAAIERFQRNHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYQAFSQLIERYPG
SKYAADASERMAKLVDALGGNEIAVARYYMKRGAYLAAANRAQKIVERYQNTRFVEEALAIMESSYRKMDKPQLADDTRR
ILAQNFPNSPYLNKSWSDNNIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=652055 LVJ85_RS04880 WP_244741987.1 1000030..1000836(+) (comL) [Neisseria sp. Dent CA1/247]
ATGAAAAAAATTCTTTTAGTTATTTCATTGGGTTTGGCTTTGGGCGGCTGTGCCGGCACCAAAGGCACGATTGATAAAGA
CGCGCAAATCACTCAGGATTGGTCGGTTGAAAAACTGTATGCTGAGGCTCACGACGAGTTAAACAGCAGCAATTATACGC
GAGCGATTAAGTTATACGAAATTTTGGAATCGCGTTTCCCCAACGGCCGCTACGCCCAACAATCCCAACTAGACACGGCC
TATGCTCACTATAAAGACGACGAACCCGAAAAAGCTTTAGCCGCTATCGAACGCTTCCAACGCAACCACCCCCAACATCC
GAATATGGACTATGCCTTATATCTCAAAGGCTTGGTTCTGTTTAACGAAGACCAGTCGTTTTTAAACAAACTGGCTTCGC
AAGACTGGTCAGACCGCGACCCCAAAGCAAACCGCGATGCTTACCAAGCGTTTTCCCAGCTGATCGAACGCTATCCCGGC
AGCAAATACGCCGCCGATGCCAGCGAACGCATGGCCAAGCTGGTAGATGCTTTGGGCGGCAATGAAATCGCCGTTGCGCG
TTACTACATGAAACGCGGCGCTTATTTGGCTGCGGCCAACCGCGCCCAAAAAATCGTCGAACGCTATCAAAATACCCGTT
TCGTGGAAGAAGCCTTGGCCATTATGGAATCTTCTTACCGCAAAATGGACAAACCGCAACTTGCCGACGACACCCGCCGC
ATTTTGGCGCAAAACTTCCCCAACAGCCCTTATCTGAACAAATCATGGTCGGATAACAACATTCCGTGGTGGCGCTATTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

78.652

99.627

0.784
  comL Neisseria gonorrhoeae MS11

78.652

99.627

0.784