Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LVJ85_RS04890 Genome accession   NZ_CP091522
Coordinates   1001839..1002288 (+) Length   149 a.a.
NCBI ID   WP_244743046.1    Uniprot ID   -
Organism   Neisseria sp. Dent CA1/247     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 996839..1007288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ85_RS04870 (LVJ85_04870) - 998359..998811 (+) 453 WP_244741981.1 isoprenylcysteine carboxylmethyltransferase family protein -
  LVJ85_RS04875 (LVJ85_04875) rluD 998904..1000031 (-) 1128 WP_244741984.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LVJ85_RS04880 (LVJ85_04880) comL 1000030..1000836 (+) 807 WP_244741987.1 outer membrane protein assembly factor BamD Machinery gene
  LVJ85_RS04885 (LVJ85_04885) - 1001019..1001732 (+) 714 WP_244741991.1 phosphoglycolate phosphatase -
  LVJ85_RS04890 (LVJ85_04890) recX 1001839..1002288 (+) 450 WP_244743046.1 recombination regulator RecX Regulator
  LVJ85_RS04895 (LVJ85_04895) serC 1002385..1003491 (-) 1107 WP_244741994.1 phosphoserine transaminase -
  LVJ85_RS04900 (LVJ85_04900) - 1003802..1004572 (-) 771 WP_244743049.1 TatD family hydrolase -
  LVJ85_RS04905 (LVJ85_04905) - 1004682..1005200 (+) 519 WP_244741997.1 RDD family protein -
  LVJ85_RS04910 (LVJ85_04910) - 1005381..1006799 (+) 1419 WP_244742000.1 mechanosensitive ion channel family protein -
  LVJ85_RS04915 (LVJ85_04915) nudB 1006807..1007256 (+) 450 WP_244742003.1 dihydroneopterin triphosphate diphosphatase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17520.89 Da        Isoelectric Point: 8.0549

>NTDB_id=652056 LVJ85_RS04890 WP_244743046.1 1001839..1002288(+) (recX) [Neisseria sp. Dent CA1/247]
MKPQKSLRARALDILARQEISRAELKRKLAPHAEDEEELDKLLDEFAERHWQSDDRFAEAYIHSKSRQHGTLRLKQALQA
KGVDEETVREYLPSRESELETAMAVLKKKFKQPAADMKDKQKQIRFLAYRGFDMDTIQTALKNCRYDDE

Nucleotide


Download         Length: 450 bp        

>NTDB_id=652056 LVJ85_RS04890 WP_244743046.1 1001839..1002288(+) (recX) [Neisseria sp. Dent CA1/247]
ATGAAGCCGCAAAAATCCTTACGCGCCCGAGCCTTAGACATCCTCGCCCGGCAGGAAATCAGCCGTGCCGAACTCAAGCG
CAAGCTCGCGCCGCATGCCGAGGATGAAGAGGAATTGGACAAGCTGTTGGATGAATTTGCCGAGCGCCATTGGCAATCCG
ACGATCGCTTTGCCGAAGCCTATATCCACAGCAAAAGCAGGCAACACGGCACACTGCGTTTGAAACAGGCGTTGCAGGCC
AAAGGTGTGGATGAAGAAACCGTGCGTGAATATCTGCCTTCGCGGGAGAGCGAATTGGAAACGGCTATGGCGGTATTGAA
GAAAAAGTTTAAGCAGCCCGCCGCGGATATGAAAGACAAACAAAAGCAGATCCGTTTCCTCGCTTATCGGGGTTTTGATA
TGGATACGATTCAGACGGCCTTAAAAAACTGCCGTTACGATGATGAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(30-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

72.222

96.644

0.698