Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LVJ85_RS02655 Genome accession   NZ_CP091522
Coordinates   533412..533723 (+) Length   103 a.a.
NCBI ID   WP_095197808.1    Uniprot ID   -
Organism   Neisseria sp. Dent CA1/247     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 534525..535499 533412..533723 flank 802


Gene organization within MGE regions


Location: 533412..535499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ85_RS02655 (LVJ85_02655) comE 533412..533723 (+) 312 WP_095197808.1 helix-hairpin-helix domain-containing protein Machinery gene
  LVJ85_RS02660 (LVJ85_02660) - 534154..534339 (-) 186 WP_244741218.1 hypothetical protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10764.61 Da        Isoelectric Point: 10.5603

>NTDB_id=652051 LVJ85_RS02655 WP_095197808.1 533412..533723(+) (comE) [Neisseria sp. Dent CA1/247]
MKKYLAGALALLWSAVSLAAVNINTATAEELKALPGIGPSKAAAIVEYRQHNGQFKSVDDLKNVKGIGEGILAKLRDEAT
VGGGKKPAKAAVPALKEKAKEKR

Nucleotide


Download         Length: 312 bp        

>NTDB_id=652051 LVJ85_RS02655 WP_095197808.1 533412..533723(+) (comE) [Neisseria sp. Dent CA1/247]
ATGAAGAAATATTTAGCGGGTGCGCTGGCTCTGTTGTGGTCGGCGGTATCGCTGGCGGCGGTGAATATCAATACGGCGAC
GGCGGAGGAATTGAAGGCGTTGCCGGGTATCGGTCCGTCGAAGGCGGCGGCGATTGTGGAGTACCGTCAGCACAACGGTC
AGTTTAAGAGTGTTGACGATTTGAAGAATGTGAAGGGTATCGGCGAGGGTATTTTAGCGAAGTTGCGCGATGAGGCGACG
GTTGGTGGCGGTAAGAAGCCGGCCAAAGCGGCGGTGCCGGCGCTGAAGGAGAAGGCTAAAGAGAAGCGCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

59.596

96.117

0.573
  comE Neisseria gonorrhoeae MS11

59.596

96.117

0.573
  comE Neisseria gonorrhoeae MS11

59.596

96.117

0.573
  comE Neisseria gonorrhoeae MS11

59.596

96.117

0.573
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.852

78.641

0.408