Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG985_RS22370 Genome accession   NZ_CP108046
Coordinates   4940413..4941078 (-) Length   221 a.a.
NCBI ID   WP_371670115.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00289     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4935413..4946078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG985_RS22350 (OG985_22220) - 4935606..4937000 (-) 1395 WP_371670112.1 ethanolamine ammonia-lyase subunit EutB -
  OG985_RS22355 (OG985_22225) - 4937206..4938715 (+) 1510 Protein_4444 APC family permease -
  OG985_RS22360 (OG985_22230) - 4938939..4939163 (+) 225 WP_371670113.1 hypothetical protein -
  OG985_RS22365 (OG985_22235) - 4939147..4940364 (-) 1218 WP_371670114.1 cytochrome P450 -
  OG985_RS22370 (OG985_22240) vraR 4940413..4941078 (-) 666 WP_371670115.1 response regulator Regulator
  OG985_RS22375 (OG985_22245) - 4941075..4942424 (-) 1350 WP_371670116.1 sensor histidine kinase -
  OG985_RS22380 (OG985_22250) vraR 4942599..4943273 (-) 675 WP_371670117.1 response regulator Regulator
  OG985_RS22385 (OG985_22255) - 4943270..4944697 (-) 1428 WP_371674460.1 sensor histidine kinase -
  OG985_RS22390 (OG985_22260) - 4944741..4945922 (-) 1182 WP_371674461.1 acyltransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23804.53 Da        Isoelectric Point: 4.7187

>NTDB_id=652012 OG985_RS22370 WP_371670115.1 4940413..4941078(-) (vraR) [Streptomyces sp. NBC_00289]
MTIRVLIADDQMMVREGFSVLLNAMPDIEVVGEAVNGREAVDRVRDLTPDVVLMDIRMPELNGIEATREIVAADGAAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLAEGVRVVASGEALLAPSVTRRLITEFSKLAGTPRLMPSAQAAYGDLTD
RETEVLVLIAQGLSNAEIAGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=652012 OG985_RS22370 WP_371670115.1 4940413..4941078(-) (vraR) [Streptomyces sp. NBC_00289]
ATGACGATCCGCGTACTGATCGCGGACGACCAGATGATGGTGCGCGAGGGCTTCTCGGTCCTGTTGAACGCGATGCCGGA
CATCGAGGTCGTGGGCGAGGCGGTGAACGGGCGGGAGGCGGTCGACCGCGTCCGTGACCTCACGCCGGACGTGGTGCTGA
TGGACATCCGCATGCCGGAGCTGAACGGCATCGAGGCGACCCGGGAGATCGTCGCCGCGGACGGCGCGGCGAAGGTGCTG
GTGCTCACTACCTTCGATCTCGACGAGTACGTCTACCAGGCGCTGCGGGCGGGAGCCTCCGGCTTCCTCCTCAAGGACGC
CTCGGCACGCCAGCTCGCCGAAGGGGTGCGGGTGGTGGCGTCCGGCGAGGCGCTCCTCGCGCCGTCCGTGACCAGGCGGC
TGATCACGGAGTTCTCGAAACTGGCCGGCACCCCGCGCCTCATGCCGTCCGCGCAGGCCGCGTACGGCGATCTGACCGAC
CGGGAGACGGAGGTGCTGGTACTGATCGCGCAGGGCCTGTCGAACGCGGAGATCGCCGGGCGGCTGGTGGTCGCCGAGTC
GACGATCAAGACGCATGTCAGCCGCATCCTGGTGAAACTGGGCCTGCGGGACCGGACGCAGGCGGCGGTGTTCGCGTACG
AGGCGAGGCTGGTCACGCCCGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-212)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.119

98.643

0.425
  degU Bacillus subtilis subsp. subtilis str. 168

42.857

98.19

0.421