Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   LVJ80_RS08900 Genome accession   NZ_CP091519
Coordinates   1688330..1691665 (-) Length   1111 a.a.
NCBI ID   WP_034294150.1    Uniprot ID   A0A376BM93
Organism   Alysiella crassa strain S6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1683330..1696665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ80_RS08885 (LVJ80_01080) - 1683641..1684396 (-) 756 WP_051968585.1 SIMPL domain-containing protein -
  LVJ80_RS08890 (LVJ80_01075) - 1684529..1685611 (+) 1083 WP_115723615.1 IS4 family transposase -
  LVJ80_RS08895 (LVJ80_01070) - 1685918..1688146 (-) 2229 WP_034294152.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LVJ80_RS08900 (LVJ80_01065) recC 1688330..1691665 (-) 3336 WP_034294150.1 exodeoxyribonuclease V subunit gamma Machinery gene
  LVJ80_RS08905 (LVJ80_01060) trxA 1691870..1692199 (+) 330 WP_034294148.1 thioredoxin TrxA -
  LVJ80_RS08910 (LVJ80_01055) - 1692461..1693984 (-) 1524 WP_034294146.1 fumarate hydratase -
  LVJ80_RS08915 (LVJ80_01050) - 1694188..1694712 (-) 525 WP_034294145.1 Spy/CpxP family protein refolding chaperone -
  LVJ80_RS08920 (LVJ80_01045) - 1694996..1695673 (+) 678 WP_034294142.1 DnaA ATPase domain-containing protein -
  LVJ80_RS08925 (LVJ80_01040) - 1695666..1696334 (+) 669 WP_034294140.1 HAD family phosphatase -

Sequence

Protein


Download         Length: 1111 a.a.        Molecular weight: 125814.35 Da        Isoelectric Point: 5.3262

>NTDB_id=652012 LVJ80_RS08900 WP_034294150.1 1688330..1691665(-) (recC) [Alysiella crassa strain S6]
MLHLYQSNRLEDLADMLATLHQVAPLQSPLAPEQIVVQSQGMRRFINQFLAKKQGIAANIQFSLPAGLSFRLMRETMPDT
PELNPFDTEVMRWRLLALFQSPEFQGADFQAAREVLHSYLDNGEYAAYQLAGQLADVFDQYLVYRPHWIETWHAGQLVDG
VSDEQIWQAQLWRYLDDGRQSAPHRVELWHNLMKHLDNPPEWLPERFFVFGIATLAPMYLELLIRLAKTREVHIFALNPS
ELYWGQVIEPAKILNQSEEPDLSLQGHPLLASLGKQGRDFFDALSEAQIGIDVNSYDTAAFSGCLLHELQKNLQTQTLPE
DSDYLQNHDLTTETVLKHLQTKDRSIQIHSAHSPLRELQILKDQILVLLEQNKDWQPHDIAILTPHIEPYAPYIHAVFGQ
QTGSGQALPYSLSDVKLSRRQPLLYALEQTLSLLNSRFEVDKLLPLLDSETVLQRFDLTREDLLLLHDTIAKLNIHWGAD
SAQRAKFGDSQRLFTWQQGLERLILGWLLPESKQNKGLWQNISAWHTRPDHLDVLSKFTALVRTLAQTQREWQAATHVSG
WAERIRRLMANVFAPSDDDREAIYQLEQSLARWVAESELADFAQSLTQDTAIAHIQRFLNSADETHFLRGGITFCGMVPM
RSLPFKMIALIGLNDGDFPRNTKAASFDLIAKHPKKGDRARRDDDRYLFLEAVLSARQVLYLSFIGKDIRSDEPRTPSTL
LNELVDCVAEMVGVSSKDLLDNWLTQHPLQAFSPKYFSGSLHSSRTDYAAALNAEKIAVADFFRQPETDFTEHASYLIEQ
KDFIQFWRNPVRSYLRNTLNWQAPNAGMEWDAAEPFAPVQTRLLSDAYVSARRHNRQFDDVAAELTAQSLLPAGELGALA
QGDFAAQAAALDGKLLYSKALPERSGVLPSVSGCLNYRLNHDYEVGQVIYAGQFLNEFNEHGNLSAADKIELLLQHVIFC
AATPEHDRQPESRQTHFIQLPNVLTLPPLAQDLAQEILSLWISVYQQGHAAPQPFFPRVQLAAANKLFTPKKGQDGLDYD
GAIAAAANIYHNGYKGFAQEDYPEVKLVFGRNPDSEPPYRSDLFMNLTENLFAGLAGCLKALAGENETDVG

Nucleotide


Download         Length: 3336 bp        

>NTDB_id=652012 LVJ80_RS08900 WP_034294150.1 1688330..1691665(-) (recC) [Alysiella crassa strain S6]
ATGCTCCATCTCTACCAATCCAATCGCCTAGAAGACCTTGCCGATATGCTGGCAACCCTGCACCAAGTTGCGCCGCTTCA
ATCGCCGCTCGCACCCGAACAAATTGTGGTGCAAAGTCAGGGCATGCGCCGTTTTATCAATCAATTTTTGGCGAAAAAAC
AAGGCATAGCGGCGAATATTCAATTCAGTCTGCCTGCGGGTTTGAGCTTTCGTTTAATGCGCGAAACCATGCCCGACACG
CCCGAATTAAACCCATTTGACACGGAAGTCATGCGCTGGCGACTGCTGGCGTTGTTTCAATCGCCCGAATTTCAGGGCGC
AGATTTTCAGGCTGCCCGAGAAGTATTGCACAGCTATTTGGACAATGGCGAATACGCCGCCTATCAATTGGCAGGGCAAT
TGGCAGACGTGTTTGACCAATATTTGGTGTATCGCCCCCATTGGATTGAAACGTGGCACGCGGGGCAATTGGTGGACGGC
GTATCGGACGAGCAAATCTGGCAAGCGCAATTGTGGCGATATTTGGACGATGGGCGACAATCCGCGCCGCACCGCGTGGA
ATTGTGGCATAACCTGATGAAACATTTGGATAATCCACCCGAATGGCTGCCTGAACGCTTTTTCGTGTTTGGCATTGCCA
CGCTTGCGCCAATGTATCTGGAATTACTGATACGTTTGGCGAAAACGCGTGAAGTGCATATTTTCGCGCTCAATCCCAGC
GAATTGTATTGGGGACAAGTGATTGAACCAGCAAAAATTTTAAATCAATCGGAAGAACCCGATTTGAGTTTACAGGGACA
CCCACTACTCGCTTCTTTGGGCAAACAAGGGCGTGATTTTTTTGACGCTTTGTCGGAAGCGCAAATTGGCATAGATGTGA
ATTCGTATGACACGGCGGCATTTTCAGGCTGCCTGTTGCACGAATTGCAAAAAAATCTGCAAACCCAAACGCTGCCTGAA
GACAGCGATTATTTGCAAAACCATGATTTAACAACAGAAACTGTTTTAAAACATCTGCAAACCAAAGACCGCAGCATTCA
AATCCACAGCGCACACAGCCCTTTGCGCGAATTGCAAATTTTAAAAGACCAAATCCTTGTTTTATTAGAACAAAACAAGG
ATTGGCAGCCACACGACATCGCCATACTCACGCCGCATATTGAGCCATACGCGCCTTATATTCATGCCGTGTTTGGGCAA
CAAACGGGTAGCGGTCAGGCTTTGCCCTATTCCTTGTCTGATGTGAAATTGTCGCGCCGCCAGCCACTTTTGTATGCTTT
GGAGCAAACTTTGTCGCTGTTGAACAGCCGTTTTGAAGTGGATAAATTATTGCCCTTGCTAGACAGCGAAACAGTCTTAC
AACGCTTTGATTTAACAAGAGAAGATTTGCTTTTATTGCACGACACAATTGCCAAATTGAATATTCATTGGGGCGCGGAT
TCGGCGCAACGGGCGAAATTTGGCGATTCGCAGCGTTTGTTTACATGGCAACAGGGTTTGGAGCGGCTGATTTTGGGTTG
GCTGCTGCCTGAAAGTAAACAAAACAAAGGTTTATGGCAAAACATCAGCGCGTGGCACACCCGCCCCGACCATTTGGACG
TGTTGAGCAAATTTACCGCTTTGGTGCGTACTCTGGCGCAAACGCAGCGCGAATGGCAGGCTGCCACCCATGTTTCGGGC
TGGGCGGAACGCATTCGGCGTTTGATGGCGAATGTGTTTGCCCCCAGCGATGATGACCGTGAAGCAATTTACCAATTGGA
ACAATCGCTTGCACGCTGGGTGGCAGAAAGTGAATTGGCGGATTTTGCCCAATCTTTGACGCAGGACACGGCAATTGCCC
ACATTCAACGCTTTTTGAATTCGGCGGACGAAACGCATTTTTTGCGTGGTGGGATAACGTTTTGCGGCATGGTGCCGATG
CGTTCATTGCCGTTCAAAATGATTGCGCTGATTGGTTTGAATGACGGCGATTTTCCGCGCAACACGAAAGCGGCGAGCTT
TGATTTAATCGCCAAACACCCAAAAAAAGGCGACCGTGCGCGGCGCGATGACGACCGTTATTTGTTTTTGGAAGCGGTGT
TATCAGCGCGACAAGTGTTGTATTTATCGTTTATTGGCAAAGACATACGCAGCGATGAGCCACGCACACCGTCCACGCTG
CTCAATGAATTGGTGGATTGTGTGGCGGAGATGGTGGGCGTGTCGTCCAAAGATTTGCTGGACAATTGGCTGACCCAGCA
CCCTTTGCAAGCCTTTTCGCCGAAATATTTTTCAGGCAGTCTGCACAGCAGTCGCACCGATTACGCGGCGGCTTTGAATG
CGGAAAAAATCGCGGTGGCGGATTTTTTCAGGCAGCCTGAAACGGATTTCACAGAACACGCTAGCTATTTGATTGAACAA
AAAGATTTTATTCAATTTTGGCGCAATCCCGTTCGCAGCTATTTGCGTAACACGCTGAATTGGCAAGCCCCCAACGCTGG
CATGGAATGGGACGCGGCTGAACCCTTTGCACCCGTGCAAACGCGTTTATTATCTGACGCTTATGTTTCCGCGCGGCGAC
ACAATCGGCAATTTGACGATGTGGCGGCGGAATTGACGGCGCAAAGTTTGTTGCCTGCGGGCGAATTGGGCGCGTTGGCG
CAAGGTGATTTTGCGGCGCAAGCGGCGGCATTGGACGGAAAATTGTTGTACAGCAAAGCCTTACCAGAGCGTAGTGGCGT
GTTGCCCAGCGTTTCAGGCTGCCTGAATTATCGTTTGAATCATGATTATGAAGTGGGACAAGTGATTTACGCAGGGCAAT
TTCTCAATGAATTCAATGAACATGGCAATTTATCCGCCGCCGATAAAATTGAATTGCTGCTGCAACATGTGATTTTCTGC
GCCGCCACCCCCGAACACGACAGGCAGCCTGAAAGCCGCCAAACGCATTTTATTCAATTGCCCAATGTGCTGACTTTGCC
GCCACTCGCGCAGGACTTGGCGCAGGAAATTTTGTCTTTGTGGATAAGTGTTTATCAACAAGGACACGCCGCGCCGCAAC
CCTTTTTCCCGCGTGTGCAATTGGCGGCGGCAAACAAATTGTTCACGCCGAAAAAAGGGCAAGATGGGCTGGATTATGAT
GGTGCCATTGCCGCCGCCGCCAATATTTATCACAATGGATACAAAGGGTTTGCACAGGAAGATTATCCCGAAGTGAAATT
GGTGTTTGGGCGCAATCCTGATTCCGAACCGCCCTATCGTTCTGATTTGTTTATGAATTTGACGGAGAATTTGTTTGCAG
GGCTTGCAGGCTGCCTGAAAGCATTGGCAGGCGAAAATGAAACCGATGTGGGGTAA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(798-1026)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A376BM93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

50.362

99.55

0.501