Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LVJ80_RS09030 Genome accession   NZ_CP091519
Coordinates   1716684..1718066 (-) Length   460 a.a.
NCBI ID   WP_034295227.1    Uniprot ID   A0A376BM65
Organism   Alysiella crassa strain S6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1711684..1723066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ80_RS09000 (LVJ80_00970) rpsI 1711778..1712170 (-) 393 WP_034295800.1 30S ribosomal protein S9 -
  LVJ80_RS09005 (LVJ80_00965) rplM 1712189..1712620 (-) 432 WP_034295798.1 50S ribosomal protein L13 -
  LVJ80_RS09010 (LVJ80_00960) - 1712809..1713423 (+) 615 WP_115723617.1 SMI1/KNR4 family protein -
  LVJ80_RS09015 (LVJ80_00955) - 1713596..1713823 (+) 228 WP_034295231.1 hypothetical protein -
  LVJ80_RS09020 (LVJ80_00950) - 1713981..1715357 (+) 1377 WP_034295234.1 MFS transporter -
  LVJ80_RS09025 (LVJ80_00945) - 1715634..1716656 (-) 1023 WP_244773269.1 DUF1152 domain-containing protein -
  LVJ80_RS09030 (LVJ80_00940) radA 1716684..1718066 (-) 1383 WP_034295227.1 DNA repair protein RadA Machinery gene
  LVJ80_RS09035 (LVJ80_00935) - 1718269..1722045 (+) 3777 WP_034295224.1 M10 family metallopeptidase C-terminal domain-containing protein -
  LVJ80_RS09040 (LVJ80_00930) - 1722424..1722828 (-) 405 WP_377896404.1 rhodanese-like domain-containing protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49529.19 Da        Isoelectric Point: 7.1932

>NTDB_id=652013 LVJ80_RS09030 WP_034295227.1 1716684..1718066(-) (radA) [Alysiella crassa strain S6]
MAKAPKTLYQCTECGGTSPKWVGKCPHCGEWNTLQENIAAPEPKNARFQSWAAETTQVQKLAEVTATEVPRTATGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIALMAKTRQVLYVSGEESAQQVALRAQRLGLNADGVNLLAEIRLEAIQAA
LKQHAPHVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRIAKQMGIAMIFVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DTHSNHRMIRAIKNRFGAANELGVFAMTETGLKGVSNPSAIFLASYRDDVAGSCVLVTQEGTRPLLVEIQSLVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKIGEPAADLAAVLAMVSSFRNKPLPEKMVAFGEIGLSGE
IRPVPRGQERLKEAEKLGFKRAIVPKANMPRNEKEFPKLKIYGVENLHEAVSLCRDLVDE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=652013 LVJ80_RS09030 WP_034295227.1 1716684..1718066(-) (radA) [Alysiella crassa strain S6]
ATGGCAAAAGCCCCCAAAACCCTCTACCAATGCACCGAATGCGGCGGCACATCGCCCAAATGGGTTGGCAAATGCCCCCA
TTGTGGCGAATGGAACACGCTCCAAGAAAACATCGCTGCCCCCGAACCGAAAAACGCCCGTTTCCAATCGTGGGCAGCCG
AAACCACCCAAGTGCAAAAATTAGCCGAAGTTACCGCCACCGAAGTGCCACGCACCGCCACAGGCATGGGCGAGCTTGAC
CGTGTTTTGGGTGGCGGTTTGGTAGATGGCGCAGTGATTTTATTGGGTGGCGACCCGGGTATCGGCAAATCCACCCTGCT
CTTACAAACCATTGCTTTAATGGCAAAAACACGCCAAGTTTTGTACGTTTCAGGCGAAGAATCCGCCCAACAAGTCGCCC
TACGCGCCCAACGTTTGGGTTTGAATGCCGATGGCGTAAATTTGCTTGCCGAAATCCGTTTGGAAGCGATTCAGGCAGCC
TTAAAACAACACGCACCCCACGTTGTCGTGATTGACTCCATTCAAACCATGTATTCCGACCAAATCACATCAGCCCCAGG
TTCTGTGTCGCAAGTGCGCGAATGCGCCGCCCAGCTCACGCGCATTGCCAAACAAATGGGCATTGCCATGATTTTTGTCG
GACACGTTACCAAAGATGGCGCAATCGCAGGCCCGCGCGTTTTGGAGCATATGGTGGACACCGTTTTGTATTTTGAAGGC
GACACCCATTCCAACCACCGCATGATACGCGCCATCAAAAACCGCTTTGGCGCAGCAAACGAATTGGGCGTGTTCGCCAT
GACCGAAACGGGTTTGAAAGGCGTATCCAATCCGTCCGCGATTTTTTTAGCGAGTTATCGGGACGATGTGGCAGGCTCAT
GCGTGTTGGTAACACAAGAAGGCACACGCCCATTATTGGTTGAAATACAATCACTTGTAGATGACGCACACGGTTTCACC
CCCAAAAGATTAACCGTGGGTTTGGAACAAAACCGCTTGGCGATGTTGCTGGCGGTGCTGAACCGACACGCAGGCATCGC
CTGTTTTGACCAAGACGTGTTTTTGAACGCGGTGGGTGGCGTGAAAATTGGCGAACCTGCCGCAGATTTGGCGGCGGTGT
TGGCGATGGTTTCCAGTTTCCGCAATAAGCCATTGCCCGAAAAAATGGTGGCGTTTGGCGAGATTGGTTTGAGTGGCGAA
ATCCGCCCCGTGCCACGCGGACAAGAACGCCTGAAAGAAGCCGAGAAATTGGGTTTCAAACGCGCCATCGTGCCAAAAGC
CAATATGCCGCGCAATGAAAAAGAGTTTCCAAAATTAAAGATTTACGGTGTGGAAAATTTGCACGAAGCCGTGAGTTTGT
GTCGGGATTTGGTTGATGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(78-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A376BM65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.096

99.13

0.507
  radA Streptococcus pneumoniae Rx1

48.894

98.261

0.48
  radA Streptococcus pneumoniae D39

48.894

98.261

0.48
  radA Streptococcus pneumoniae TIGR4

48.894

98.261

0.48
  radA Streptococcus pneumoniae R6

48.894

98.261

0.48
  radA Streptococcus mitis NCTC 12261

48.352

98.913

0.478
  radA Streptococcus mitis SK321

50.35

93.261

0.47