Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG985_RS22380 Genome accession   NZ_CP108046
Coordinates   4942599..4943273 (-) Length   224 a.a.
NCBI ID   WP_371670117.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00289     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4937599..4948273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG985_RS22360 (OG985_22230) - 4938939..4939163 (+) 225 WP_371670113.1 hypothetical protein -
  OG985_RS22365 (OG985_22235) - 4939147..4940364 (-) 1218 WP_371670114.1 cytochrome P450 -
  OG985_RS22370 (OG985_22240) vraR 4940413..4941078 (-) 666 WP_371670115.1 response regulator Regulator
  OG985_RS22375 (OG985_22245) - 4941075..4942424 (-) 1350 WP_371670116.1 sensor histidine kinase -
  OG985_RS22380 (OG985_22250) vraR 4942599..4943273 (-) 675 WP_371670117.1 response regulator Regulator
  OG985_RS22385 (OG985_22255) - 4943270..4944697 (-) 1428 WP_371674460.1 sensor histidine kinase -
  OG985_RS22390 (OG985_22260) - 4944741..4945922 (-) 1182 WP_371674461.1 acyltransferase -
  OG985_RS22395 (OG985_22265) - 4946068..4947096 (-) 1029 WP_371674462.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24293.04 Da        Isoelectric Point: 4.7638

>NTDB_id=652013 OG985_RS22380 WP_371670117.1 4942599..4943273(-) (vraR) [Streptomyces sp. NBC_00289]
MTSGTIRVLIADDQQMVRQGFTVLLNTKPDIEVIGQAVDGMDAVVKVAELTPDVVLMDIRMPELGGIEATRRITGERPDI
KVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDGRPRSPLKERVGDLT
ERETEVLALIAQGLSNAEIAERLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPAGY

Nucleotide


Download         Length: 675 bp        

>NTDB_id=652013 OG985_RS22380 WP_371670117.1 4942599..4943273(-) (vraR) [Streptomyces sp. NBC_00289]
ATGACGAGCGGCACCATCCGCGTACTCATCGCCGACGACCAGCAGATGGTCCGGCAGGGCTTCACCGTGCTGCTCAACAC
CAAGCCGGACATCGAGGTGATCGGTCAGGCGGTCGACGGGATGGACGCCGTCGTCAAGGTCGCCGAACTCACCCCGGACG
TCGTTCTCATGGACATCCGCATGCCGGAGCTCGGCGGCATCGAGGCAACCCGCCGTATCACCGGCGAGCGGCCCGACATC
AAGGTGCTGGTGCTCACCACCTTCGACCTCGACGAGTACGTGTACGAGGCGCTGCGCGCCGGCGCGTCCGGGTTCCTGCT
GAAGGACGCGTCCGCGGACCAACTGGCCGAGGCGGTACGGGTGGTGGCGGCCGGCGACGCCCTGCTCGCGCCGGGCATCA
CCCGCCGTCTGATCGCCGAGTTCTCCCGTCTGGACGGCAGGCCCCGCTCCCCGCTCAAGGAACGCGTGGGCGATCTGACC
GAACGCGAGACGGAGGTGCTCGCCCTGATCGCGCAGGGACTGTCGAACGCGGAGATCGCCGAGCGACTCGTCGTGGCCGA
GCAGACCGTGAAGACCCATGTGGGCCGCATCCTGGTGAAGCTGGGCCTGCGGGACCGCACGCAGGCGGCGGTGTTCGCGT
ACGAGTCGGGGCTGGTGCGTCCGGCCGGGTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-120)

Bacterial regulatory proteins, luxR family (GerE)

(159-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.444

96.429

0.429
  degU Bacillus subtilis subsp. subtilis str. 168

42.601

99.554

0.424