Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LVJ79_RS00380 Genome accession   NZ_CP091518
Coordinates   59586..59894 (-) Length   102 a.a.
NCBI ID   WP_003788664.1    Uniprot ID   A0AAX2J377
Organism   Kingella kingae strain 4177/66     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 54586..64894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ79_RS00350 (LVJ79_00350) uvrC 55094..56926 (-) 1833 WP_032827844.1 excinuclease ABC subunit UvrC -
  LVJ79_RS00355 (LVJ79_00355) - 56962..57324 (-) 363 WP_331250423.1 HAD domain-containing protein -
  LVJ79_RS00360 (LVJ79_00360) - 57273..57488 (-) 216 WP_071461627.1 FAD-dependent monooxygenase -
  LVJ79_RS00365 (LVJ79_00365) - 57473..57646 (-) 174 WP_230466983.1 hypothetical protein -
  LVJ79_RS00370 (LVJ79_00370) tsf 57699..58553 (-) 855 WP_003788661.1 translation elongation factor Ts -
  LVJ79_RS00375 (LVJ79_00375) rpsB 58638..59363 (-) 726 WP_003788662.1 30S ribosomal protein S2 -
  LVJ79_RS00380 (LVJ79_00380) comE 59586..59894 (-) 309 WP_003788664.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 10803.69 Da        Isoelectric Point: 10.6245

>NTDB_id=651970 LVJ79_RS00380 WP_003788664.1 59586..59894(-) (comE) [Kingella kingae strain 4177/66]
MLKKIVLSIISLGVTTLSFAQLNINTATADELDKQLNGIGPAKAKAIVEYREKNGAFKSVDDLASVPGIKMATVNKLREQ
ATVGNVAAKPVTTKAQPITKPK

Nucleotide


Download         Length: 309 bp        

>NTDB_id=651970 LVJ79_RS00380 WP_003788664.1 59586..59894(-) (comE) [Kingella kingae strain 4177/66]
ATGTTAAAGAAAATAGTGTTGTCTATTATTTCATTAGGTGTTACCACACTAAGTTTTGCCCAATTAAATATTAATACTGC
AACGGCTGATGAATTGGATAAGCAACTCAATGGTATTGGTCCTGCCAAGGCAAAGGCGATTGTTGAATACCGTGAAAAAA
ATGGTGCATTCAAATCGGTTGATGATTTAGCTTCTGTGCCAGGTATTAAAATGGCTACGGTGAATAAGTTGCGTGAACAA
GCAACTGTGGGAAATGTTGCGGCAAAACCTGTTACAACTAAAGCACAACCCATTACGAAGCCTAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

53.191

92.157

0.49
  comE Neisseria gonorrhoeae MS11

53.191

92.157

0.49
  comE Neisseria gonorrhoeae MS11

53.191

92.157

0.49
  comE Neisseria gonorrhoeae MS11

53.191

92.157

0.49
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.561

80.392

0.382