Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LVJ84_RS13485 Genome accession   NZ_CP091516
Coordinates   2265693..2266019 (-) Length   108 a.a.
NCBI ID   WP_244731772.1    Uniprot ID   -
Organism   Kingella potus strain 3/SID/1128     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2260693..2271019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ84_RS13435 (LVJ84_13435) - 2260728..2261027 (+) 300 WP_115308723.1 DUF2818 family protein -
  LVJ84_RS13440 (LVJ84_13440) - 2261180..2261383 (-) 204 WP_244731761.1 hypothetical protein -
  LVJ84_RS13445 (LVJ84_13445) - 2261335..2261577 (-) 243 WP_244731764.1 hypothetical protein -
  LVJ84_RS13450 (LVJ84_13450) lptA 2261854..2262378 (-) 525 WP_115308720.1 lipopolysaccharide transport periplasmic protein LptA -
  LVJ84_RS13455 (LVJ84_13455) lptC 2262359..2262940 (-) 582 WP_115308719.1 LPS export ABC transporter periplasmic protein LptC -
  LVJ84_RS13460 (LVJ84_13460) - 2262937..2263482 (-) 546 WP_244731766.1 HAD family hydrolase -
  LVJ84_RS13465 (LVJ84_13465) - 2263694..2264259 (+) 566 Protein_2692 NADPH-dependent FMN reductase -
  LVJ84_RS15355 - 2264625..2264786 (+) 162 WP_342345901.1 Arm DNA-binding domain-containing protein -
  LVJ84_RS13475 (LVJ84_13475) - 2264944..2265090 (-) 147 WP_244731769.1 hypothetical protein -
  LVJ84_RS13480 (LVJ84_13480) - 2265169..2265417 (-) 249 WP_147286621.1 hypothetical protein -
  LVJ84_RS13485 (LVJ84_13485) comE 2265693..2266019 (-) 327 WP_244731772.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 10992.85 Da        Isoelectric Point: 10.6711

>NTDB_id=651968 LVJ84_RS13485 WP_244731772.1 2265693..2266019(-) (comE) [Kingella potus strain 3/SID/1128]
MNLKKSLFGLLAYAAAALVSAAVNINTATAEELKALPGIGQAKAQAIVDYRKENGAFKSVDDLKKVKGIGDGILGKLKDQ
ATVGAAPAAKPAKPAQAAVPPPKNRKSA

Nucleotide


Download         Length: 327 bp        

>NTDB_id=651968 LVJ84_RS13485 WP_244731772.1 2265693..2266019(-) (comE) [Kingella potus strain 3/SID/1128]
ATGAATCTGAAAAAATCTTTGTTCGGTCTTTTGGCGTATGCCGCAGCGGCTTTGGTTTCGGCTGCAGTCAACATCAATAC
GGCCACAGCGGAGGAGTTGAAGGCCCTGCCGGGTATCGGTCAGGCGAAGGCGCAGGCGATTGTGGATTACCGTAAGGAAA
ACGGTGCGTTCAAATCGGTGGACGATTTGAAAAAGGTCAAAGGAATAGGCGACGGTATTTTGGGCAAATTGAAGGATCAG
GCAACGGTTGGTGCGGCTCCCGCCGCCAAACCGGCAAAACCGGCACAGGCCGCCGTCCCGCCGCCAAAAAACCGTAAAAG
CGCATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(22-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

63.441

86.111

0.546
  comE Neisseria gonorrhoeae MS11

63.441

86.111

0.546
  comE Neisseria gonorrhoeae MS11

63.441

86.111

0.546
  comE Neisseria gonorrhoeae MS11

63.441

86.111

0.546
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.025

75

0.435