Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LVJ84_RS11650 Genome accession   NZ_CP091516
Coordinates   1975043..1975369 (-) Length   108 a.a.
NCBI ID   WP_244731547.1    Uniprot ID   -
Organism   Kingella potus strain 3/SID/1128     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1970043..1980369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ84_RS11625 (LVJ84_11625) pgsA 1970722..1971285 (-) 564 WP_115308359.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LVJ84_RS11630 (LVJ84_11630) - 1971518..1972141 (+) 624 WP_147286603.1 hypothetical protein -
  LVJ84_RS11635 (LVJ84_11635) - 1972232..1972450 (+) 219 WP_115308357.1 hypothetical protein -
  LVJ84_RS11640 (LVJ84_11640) hpnC 1972532..1973347 (+) 816 WP_244731546.1 squalene synthase HpnC -
  LVJ84_RS11645 (LVJ84_11645) - 1973397..1974934 (+) 1538 Protein_2323 phospholipase D family protein -
  LVJ84_RS11650 (LVJ84_11650) comE 1975043..1975369 (-) 327 WP_244731547.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 11186.06 Da        Isoelectric Point: 10.8802

>NTDB_id=651967 LVJ84_RS11650 WP_244731547.1 1975043..1975369(-) (comE) [Kingella potus strain 3/SID/1128]
MNLKKSLFGLLAYAAAALVSAAVNINTATAEELKALPGIGQAKAQAIVDYRKENGAFKSVDDLKKVKGIGDGILGKLKDQ
ATVGAAPAAKPAKPHRPPSRPPKNRKSA

Nucleotide


Download         Length: 327 bp        

>NTDB_id=651967 LVJ84_RS11650 WP_244731547.1 1975043..1975369(-) (comE) [Kingella potus strain 3/SID/1128]
ATGAATCTGAAAAAATCTTTGTTCGGTCTTTTGGCGTATGCCGCAGCGGCTTTGGTTTCGGCTGCAGTCAACATCAATAC
GGCCACAGCGGAGGAGTTGAAGGCCCTGCCGGGTATCGGTCAGGCGAAGGCGCAGGCGATTGTGGATTACCGTAAGGAAA
ACGGTGCGTTCAAATCGGTGGACGATTTGAAAAAGGTCAAAGGAATAGGCGACGGTATTTTGGGCAAATTGAAGGATCAG
GCAACGGTTGGTGCGGCTCCCGCCGCCAAACCGGCAAAACCGCACAGGCCGCCGTCCCGGCCGCCAAAAAACCGTAAAAG
CGCATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(22-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

63.736

84.259

0.537
  comE Neisseria gonorrhoeae MS11

63.736

84.259

0.537
  comE Neisseria gonorrhoeae MS11

63.736

84.259

0.537
  comE Neisseria gonorrhoeae MS11

63.736

84.259

0.537
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.025

75

0.435