Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LVJ84_RS10075 Genome accession   NZ_CP091516
Coordinates   1713202..1715298 (-) Length   698 a.a.
NCBI ID   WP_115308578.1    Uniprot ID   -
Organism   Kingella potus strain 3/SID/1128     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1708202..1720298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ84_RS10055 (LVJ84_10055) - 1708735..1709157 (+) 423 WP_244731462.1 hypothetical protein -
  LVJ84_RS10060 (LVJ84_10060) - 1709673..1711547 (-) 1875 WP_244731463.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  LVJ84_RS10065 (LVJ84_10065) trpB 1711873..1713078 (-) 1206 Protein_2008 tryptophan synthase subunit beta -
  LVJ84_RS10075 (LVJ84_10075) pilQ 1713202..1715298 (-) 2097 WP_115308578.1 type IV pilus secretin PilQ family protein Machinery gene
  LVJ84_RS10080 (LVJ84_10080) - 1715322..1715840 (-) 519 WP_244731465.1 pilus assembly protein PilP -
  LVJ84_RS10085 (LVJ84_10085) pilO 1715844..1716473 (-) 630 WP_115308577.1 type 4a pilus biogenesis protein PilO -
  LVJ84_RS10090 (LVJ84_10090) - 1716475..1717137 (-) 663 WP_115308945.1 PilN domain-containing protein -
  LVJ84_RS10095 (LVJ84_10095) pilM 1717140..1718237 (-) 1098 WP_115308576.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 75500.64 Da        Isoelectric Point: 9.8591

>NTDB_id=651966 LVJ84_RS10075 WP_115308578.1 1713202..1715298(-) (pilQ) [Kingella potus strain 3/SID/1128]
MKKAIVFNKVIPTLGLGLMGQLVLAGNITDINVSAFPNNQKVVKIKFDKDVVLPKASAVGGATQLAFDFPATSLAVSQPV
FEYEDPLLNRIATVANNGAARVLVGLNKESRYAAEVKGNEVWIHIAENGAAPSSVSASQVQRNRQTQNVASAMIDFRKSG
KNGGVVDITAPGFSGQPDVKQNSGSITVTLKNYPLPTQAQRNLDVSDFGTPVRNVVLKRIGNDTQVVIKNQGSWSSNHKV
ANGRISLDISPKLNADEAGLQSKQKSFKGGRVSFDFQDIEVTTILQIIAKESGMNIVASDSVKGRMTLTLKDVPWDQALD
LVMQARGLDMRRSGNIINVAPRSELLAQEKEILVQKKEIDELGPLYSRTFQLRYKNVEEFRKILKLDDASSDSSGNSKTI
LSTRGSALIDPATNTLIITDNSTVLQKFEKLIDQLDVPARQVMVETRIVEASDGFSRELGVKFGYAGSNGKNSWGSNWAN
AQANNNTNVNANQNNTNRTWTLNPNVNLPTTAATTSVALVHALSSGALALELSAQQAQNRAKVISSPRVLTQDRKEAVIE
SGTEVPYQEASSSGATSTSFKKAVLGMTVTPQITPDGQVIMDIKVNKDSVNRNCGASEPCIDTKRLDTRAMVENGGTLIL
GGIYEEENSEGINKVPLLGDIPVVGNLFKHRSRTNSKKELLIFITPRIVDNVGSTLRY

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=651966 LVJ84_RS10075 WP_115308578.1 1713202..1715298(-) (pilQ) [Kingella potus strain 3/SID/1128]
ATGAAGAAAGCAATAGTATTTAACAAAGTGATTCCAACATTGGGCTTGGGATTAATGGGTCAATTAGTATTGGCAGGAAA
TATCACAGATATTAATGTTTCTGCTTTTCCCAATAATCAGAAAGTTGTTAAGATAAAATTTGATAAGGATGTTGTCCTCC
CAAAGGCTTCTGCTGTGGGTGGTGCTACGCAATTGGCATTTGATTTCCCTGCTACGTCTTTAGCGGTATCCCAGCCTGTA
TTTGAGTATGAAGATCCTCTTCTTAATCGTATTGCGACCGTTGCAAACAATGGTGCAGCCCGTGTTTTAGTCGGTTTGAA
TAAGGAAAGCAGGTATGCTGCAGAAGTGAAAGGTAACGAAGTTTGGATTCATATTGCTGAAAACGGTGCAGCTCCTTCTT
CTGTTTCGGCTAGTCAAGTGCAGCGTAACCGTCAAACACAGAATGTGGCTTCTGCAATGATTGATTTTAGAAAATCTGGA
AAAAACGGTGGTGTTGTCGATATAACTGCTCCCGGTTTTTCGGGTCAGCCTGATGTCAAACAAAATAGCGGCAGTATTAC
GGTTACTTTGAAAAATTATCCGTTGCCTACGCAGGCACAAAGAAATTTGGATGTAAGTGATTTTGGAACGCCTGTACGCA
ATGTTGTGCTGAAACGTATCGGTAATGACACCCAAGTGGTTATCAAAAATCAAGGAAGCTGGTCGTCTAATCATAAAGTA
GCAAATGGGCGTATATCTCTTGATATTTCTCCAAAGCTGAATGCTGATGAGGCTGGTTTGCAATCTAAGCAGAAATCCTT
TAAAGGAGGTCGTGTTTCTTTTGACTTCCAAGATATTGAAGTAACTACTATTTTGCAGATTATTGCAAAAGAGTCTGGTA
TGAATATTGTTGCCAGTGATAGTGTTAAAGGCAGAATGACCCTCACATTAAAAGATGTGCCTTGGGATCAGGCTTTGGAT
TTGGTAATGCAGGCTCGTGGTCTTGATATGAGAAGATCAGGTAATATTATCAATGTGGCACCACGTTCAGAGTTGCTGGC
CCAAGAGAAAGAAATCTTAGTTCAGAAAAAAGAAATTGATGAGTTGGGGCCTTTGTATTCCAGAACTTTCCAATTGCGTT
ACAAAAATGTTGAAGAATTCCGCAAAATTTTGAAATTAGACGATGCAAGCAGCGATTCTTCGGGAAACAGTAAAACAATT
TTGAGTACCAGAGGAAGCGCGTTAATTGATCCGGCAACCAATACACTGATCATTACTGATAACTCGACTGTTTTACAGAA
GTTTGAGAAGTTGATAGATCAATTGGATGTTCCCGCACGTCAGGTAATGGTTGAGACCCGTATTGTGGAAGCATCGGACG
GTTTCTCCCGTGAGCTTGGTGTGAAATTTGGTTATGCCGGTTCGAACGGCAAAAACAGCTGGGGCAGCAATTGGGCTAAT
GCTCAGGCTAATAACAATACCAATGTTAATGCGAACCAAAATAACACTAATCGTACATGGACATTGAATCCCAATGTCAA
TCTGCCGACAACAGCGGCAACTACCAGTGTTGCCTTGGTGCATGCGCTTTCGTCTGGAGCGTTGGCATTGGAATTGTCTG
CACAGCAGGCACAAAACAGAGCTAAAGTCATCTCTTCACCACGTGTTTTGACACAAGACCGCAAAGAAGCAGTAATCGAA
TCGGGTACGGAAGTTCCTTACCAAGAAGCCTCTTCGAGCGGAGCGACTTCGACATCGTTTAAAAAGGCGGTTTTGGGTAT
GACGGTAACTCCGCAAATCACGCCTGATGGGCAGGTTATTATGGACATTAAGGTAAATAAAGACTCCGTCAACCGCAACT
GCGGCGCATCCGAACCCTGTATTGATACCAAACGTTTGGATACGAGGGCAATGGTTGAAAATGGCGGTACCTTGATACTT
GGTGGTATTTATGAAGAAGAAAATTCCGAAGGTATCAACAAAGTGCCTTTGTTGGGTGATATTCCCGTCGTAGGCAATCT
GTTCAAACACCGTTCGCGTACCAATAGCAAGAAAGAGCTGTTGATTTTCATCACTCCACGGATTGTGGATAATGTCGGCA
GCACATTGCGTTATTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(535-690)

Bacterial type II/III secretion system short domain (Secretin_N)

(368-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

52.089

100

0.536
  pilQ Neisseria meningitidis MC58

57.194

79.656

0.456
  pilQ Neisseria meningitidis M1080

57.194

79.656

0.456