Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LVJ84_RS09085 Genome accession   NZ_CP091516
Coordinates   1548962..1549279 (-) Length   105 a.a.
NCBI ID   WP_115307676.1    Uniprot ID   A0A377R5K9
Organism   Kingella potus strain 3/SID/1128     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1548079..1548732 1548962..1549279 flank 230


Gene organization within MGE regions


Location: 1548079..1549279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ84_RS09080 (LVJ84_09080) - 1548079..1548732 (-) 654 WP_115307381.1 IS1595 family transposase -
  LVJ84_RS09085 (LVJ84_09085) comE 1548962..1549279 (-) 318 WP_115307676.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 10609.45 Da        Isoelectric Point: 10.5628

>NTDB_id=651962 LVJ84_RS09085 WP_115307676.1 1548962..1549279(-) (comE) [Kingella potus strain 3/SID/1128]
MNLKKSLFGLLAYAAAALVSAAVNINTATAEELKALPGIGQAKAQAIVDYRKENGAFKSVDDLKKVKGIGDGILGKLKDQ
ATVGAAPAAKPAKPAQAAVPAAKKP

Nucleotide


Download         Length: 318 bp        

>NTDB_id=651962 LVJ84_RS09085 WP_115307676.1 1548962..1549279(-) (comE) [Kingella potus strain 3/SID/1128]
ATGAATCTGAAAAAATCTTTGTTCGGTCTTTTGGCGTATGCCGCAGCGGCTTTGGTTTCGGCTGCAGTCAACATCAATAC
GGCCACAGCGGAGGAGTTGAAGGCCCTGCCGGGTATCGGTCAGGCGAAGGCGCAGGCGATTGTGGATTACCGTAAGGAAA
ACGGTGCGTTCAAATCGGTGGACGATTTGAAAAAGGTCAAAGGAATAGGCGACGGTATTTTGGGCAAATTGAAGGATCAG
GCAACGGTTGGTGCGGCTCCCGCCGCCAAACCGGCAAAACCGGCACAGGCCGCCGTCCCGGCCGCCAAAAAACCGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(22-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377R5K9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

63.265

93.333

0.59
  comE Neisseria gonorrhoeae MS11

63.265

93.333

0.59
  comE Neisseria gonorrhoeae MS11

63.265

93.333

0.59
  comE Neisseria gonorrhoeae MS11

63.265

93.333

0.59
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.025

77.143

0.448