Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LVJ81_RS02690 Genome accession   NZ_CP091512
Coordinates   562673..564832 (-) Length   719 a.a.
NCBI ID   WP_026353512.1    Uniprot ID   -
Organism   Vitreoscilla stercoraria strain SAG 1488-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 557673..569832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ81_RS02670 (LVJ81_02670) rpsP 557838..558077 (-) 240 WP_019958127.1 30S ribosomal protein S16 -
  LVJ81_RS02675 (LVJ81_02675) - 558168..560876 (-) 2709 WP_019958126.1 bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase -
  LVJ81_RS02680 (LVJ81_02680) aroB 561035..562117 (-) 1083 WP_026353513.1 3-dehydroquinate synthase -
  LVJ81_RS02685 (LVJ81_02685) aroK 562092..562634 (-) 543 WP_336234320.1 shikimate kinase AroK -
  LVJ81_RS02690 (LVJ81_02690) pilQ 562673..564832 (-) 2160 WP_026353512.1 type IV pilus secretin PilQ Machinery gene
  LVJ81_RS02695 (LVJ81_02695) - 564855..565382 (-) 528 WP_019958122.1 pilus assembly protein PilP -
  LVJ81_RS02700 (LVJ81_02700) pilO 565379..566065 (-) 687 WP_019958121.1 type 4a pilus biogenesis protein PilO -
  LVJ81_RS02705 (LVJ81_02705) - 566068..566664 (-) 597 WP_019958120.1 PilN domain-containing protein -
  LVJ81_RS02710 (LVJ81_02710) pilM 566661..567755 (-) 1095 WP_019958119.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 719 a.a.        Molecular weight: 77379.47 Da        Isoelectric Point: 9.0507

>NTDB_id=651905 LVJ81_RS02690 WP_026353512.1 562673..564832(-) (pilQ) [Vitreoscilla stercoraria strain SAG 1488-6]
MNMKHIQATVKLLSGLSLGLMLQTAWAGNITDIKVTSLTDNKKIVKIKFDSDVTEPKGFVTGTPPTIALDFPNTSLNLSQ
TDFAYNDSLLGKILAAETSGRSRLAIDLREGSEYYTERKGDEIWVHISSKSASPKSLTTQSEPAIKTSSAPIGNAAQLPS
NENEYAHSGVSIDFKKGSASRGEITLNLPNPKTKFDIKRLADRLIVTLPNTSISTAEQKKLDVSTFGTPVRFINLTRNNS
QTQLEIITTGGWSYQNKLENGRQVFHIIPQSNVSQAGLSSKNQKFKGSNVTLDFQNVEVRTILQILAKESGMNIVASDSV
QGSMTISLKDVPWDQALQLVLDARDLDKRQNGNIINVAPREELLSKDKRNLTAAKELEELGPLISQSFQLKYKSVEEFRT
VLNIPVSGATSTSDRNSILSSRGSALIDPATNTLIINDVISSLRKIQTLIEELDVPSQQVMVEARIVEAGTGFSRELGTR
WFGQQTHIGSSGNTATGIGAGIVGSAGNSGSNNAWAGPMNFANIPSVNLGASAPTSSIAVVRQTLSGALGLELSASEATN
KTKTISSPRVLTQNGKKAEIKSGTEIPYQEASSSGATSTSFKEAVLGLVVTPRITPDGNIIMDLDITNDSVDNSCRASEP
CISTNNLNSTVMVENGGTIIVGGIYRRSNGGVHDKVPLLGDIPVLGNLFKRQTKNDEQRELLIFITPRIMSATGTNLRY

Nucleotide


Download         Length: 2160 bp        

>NTDB_id=651905 LVJ81_RS02690 WP_026353512.1 562673..564832(-) (pilQ) [Vitreoscilla stercoraria strain SAG 1488-6]
ATGAATATGAAACACATTCAAGCAACCGTTAAACTGCTCTCTGGTTTAAGCTTGGGTTTAATGCTACAAACAGCCTGGGC
AGGCAATATTACGGATATCAAAGTCACTTCTTTAACTGACAATAAAAAAATTGTCAAAATTAAGTTTGATAGCGATGTCA
CCGAACCCAAAGGTTTTGTAACAGGTACACCTCCTACTATTGCATTAGATTTTCCAAATACCAGTTTGAATTTGTCTCAG
ACGGATTTTGCCTACAATGACAGCTTGCTAGGTAAAATATTAGCCGCAGAAACCAGCGGCCGCTCTCGTTTGGCCATCGA
TTTACGCGAAGGCAGTGAATATTATACTGAACGCAAAGGCGATGAGATTTGGGTGCATATCAGTTCTAAAAGTGCATCAC
CAAAAAGCTTGACTACCCAAAGTGAGCCAGCCATTAAAACATCCAGTGCTCCTATTGGCAATGCTGCACAACTGCCCTCT
AATGAAAATGAATATGCTCACAGCGGCGTTAGCATAGACTTCAAAAAAGGCTCAGCTAGCCGTGGTGAAATTACTTTAAA
TCTACCTAATCCAAAAACCAAATTTGATATCAAACGCTTAGCCGACCGTCTAATTGTGACCTTGCCAAATACCAGCATTA
GTACTGCTGAGCAAAAGAAATTGGATGTTTCTACATTTGGTACACCTGTTCGTTTCATTAACTTGACTCGCAACAACTCA
CAAACCCAATTGGAAATCATAACTACTGGTGGCTGGTCATACCAAAACAAATTGGAGAATGGTCGTCAAGTATTCCACAT
CATTCCTCAAAGCAATGTGAGCCAAGCTGGTTTAAGCTCTAAAAACCAAAAATTCAAAGGCAGCAATGTCACTTTGGACT
TCCAAAATGTCGAAGTGCGCACCATCTTGCAAATTTTGGCCAAAGAATCAGGTATGAATATTGTTGCCAGTGACTCTGTT
CAAGGCAGCATGACCATCAGCTTAAAAGACGTGCCTTGGGATCAAGCATTACAATTGGTTTTAGATGCCCGCGATTTAGA
CAAACGTCAAAATGGCAACATCATTAATGTAGCGCCTCGCGAAGAACTATTGTCTAAAGACAAGCGTAATTTGACTGCCG
CCAAAGAATTGGAAGAGCTGGGTCCATTGATTTCACAGTCTTTCCAATTAAAATATAAGAGTGTGGAAGAATTCCGTACA
GTTTTGAATATTCCAGTTAGCGGTGCAACCAGTACCAGTGATCGTAACTCTATTTTATCTAGCCGTGGTTCAGCATTAAT
TGATCCTGCAACTAACACACTTATCATTAATGATGTGATTTCATCTTTGCGTAAAATTCAAACTCTAATTGAAGAATTAG
ATGTTCCTTCGCAACAAGTTATGGTTGAAGCTCGAATTGTTGAAGCTGGTACAGGTTTCTCTCGTGAGCTAGGTACTCGT
TGGTTTGGTCAACAAACTCACATAGGCTCTAGCGGCAACACTGCTACAGGGATTGGTGCAGGTATTGTTGGCTCCGCAGG
CAACTCAGGTTCCAATAATGCATGGGCAGGCCCAATGAATTTTGCTAATATTCCTAGCGTTAATTTAGGTGCCAGCGCTC
CAACCAGCAGCATCGCAGTGGTACGCCAAACATTGTCAGGTGCTTTAGGCTTAGAATTATCCGCATCCGAAGCGACTAAC
AAAACCAAAACCATTTCTAGCCCACGTGTTTTAACACAAAACGGCAAAAAAGCAGAAATCAAATCTGGTACCGAAATTCC
TTACCAAGAGGCCAGCTCAAGTGGCGCAACCTCTACTTCATTTAAAGAAGCTGTATTGGGATTAGTAGTCACGCCTCGTA
TTACGCCAGATGGCAATATCATTATGGATTTGGATATTACCAATGACTCAGTTGATAACAGCTGCCGCGCGTCTGAACCA
TGTATTTCTACCAACAATTTGAACAGTACAGTCATGGTTGAAAATGGTGGAACTATTATTGTCGGTGGTATTTATCGTCG
AAGTAATGGTGGCGTACATGATAAAGTGCCTTTATTGGGTGATATTCCAGTATTGGGCAATTTATTCAAACGTCAAACCA
AAAACGATGAGCAACGTGAATTGTTGATTTTCATCACACCTCGCATCATGAGCGCGACAGGTACAAACTTGCGTTATTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(313-357)

Bacterial type II and III secretion system protein (Secretin)

(556-710)

Bacterial type II/III secretion system short domain (Secretin_N)

(386-459)

AMIN domain (AMIN)

(40-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

45.887

100

0.497
  pilQ Neisseria gonorrhoeae strain FA1090

47.767

100

0.491
  pilQ Neisseria meningitidis MC58

51.872

78.025

0.405