Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LVJ82_RS05315 Genome accession   NZ_CP091511
Coordinates   1011136..1013286 (+) Length   716 a.a.
NCBI ID   WP_058355721.1    Uniprot ID   -
Organism   Vitreoscilla massiliensis strain SN4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1006136..1018286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ82_RS05295 (LVJ82_05295) pilM 1008193..1009287 (+) 1095 WP_058355725.1 type IV pilus assembly protein PilM -
  LVJ82_RS05300 (LVJ82_05300) - 1009284..1009889 (+) 606 WP_058355724.1 PilN domain-containing protein -
  LVJ82_RS05305 (LVJ82_05305) pilO 1009891..1010574 (+) 684 WP_058355723.1 type 4a pilus biogenesis protein PilO -
  LVJ82_RS05310 (LVJ82_05310) - 1010574..1011113 (+) 540 WP_082625565.1 pilus assembly protein PilP -
  LVJ82_RS05315 (LVJ82_05315) pilQ 1011136..1013286 (+) 2151 WP_058355721.1 type IV pilus secretin PilQ family protein Machinery gene
  LVJ82_RS05320 (LVJ82_05320) aroK 1013326..1013868 (+) 543 WP_324609296.1 shikimate kinase AroK -
  LVJ82_RS05325 (LVJ82_05325) aroB 1013843..1014925 (+) 1083 WP_058355719.1 3-dehydroquinate synthase -
  LVJ82_RS05330 (LVJ82_05330) - 1015076..1017784 (+) 2709 WP_058356255.1 bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase -
  LVJ82_RS05335 (LVJ82_05335) rpsP 1017874..1018113 (+) 240 WP_019958127.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 716 a.a.        Molecular weight: 77374.49 Da        Isoelectric Point: 8.7309

>NTDB_id=651883 LVJ82_RS05315 WP_058355721.1 1011136..1013286(+) (pilQ) [Vitreoscilla massiliensis strain SN4]
MKHIQATVKLLSGLSLGLMLQTAWAGNITDIKVTSLTDSKKIVKIKFDRDVVEPKGFVTGTPPTIALDFGQTGINLAQQD
FQYNDSLLGKILAAESNGRARLAIDLRSNSEYYTERKGDEIWVYITSKNAIPNITESVKTTATNTSTIKNNNASSQLSSN
NSDDIGHSGVGIDFKKGNGGRGEVTLNLPTPNTRFNVQKNNDRLIITLPDTSINAAEQKKLDVTTFGTPVRFVNLTRNNA
QTQLEIVTSGPWSYQNKLENGRQVFHILPQSNIAQAGLIKKNQNFKGTRVTLDFQDVEVRTILQILAKESGMNIVASDSV
RGNMTISLKDVPWDQALQLVMDSRNLDKRQNGNIIKIAPREELIAQEKEELTNAKELENLGPLLSQSFQLKYKSVEEFKT
VLDIKTGSSNSGDTKSILSARGSALIDPATNTLIINDVSSVIKKMQALVEELDVPSQQVMVEARIVSATTNFGRELGVRW
FGQHTSSSTKPSTGIGSAIPSSNTTTTGNNAWAGPMGFSNSPSVNLGVQAATSSIAIVRQTLSGALGLELSAAESEGKTK
TISSPRVLTQNGKKAEIKSGTEVPYQEASSSGATSVSFKEAVLGLTVTPRITPDGNIIMDLDVTNDSVDSTCTASEPCIK
TNNLNSTVMVENGGTIIVGGIYKQDLNNATSKVPLLGDIPVLGNLFKYQKKVDNQEELLIFITPRIMSATGSNLRY

Nucleotide


Download         Length: 2151 bp        

>NTDB_id=651883 LVJ82_RS05315 WP_058355721.1 1011136..1013286(+) (pilQ) [Vitreoscilla massiliensis strain SN4]
ATGAAACACATTCAAGCAACAGTAAAGCTGCTCTCTGGTTTGAGTTTGGGTTTAATGCTGCAAACAGCATGGGCGGGTAA
CATTACTGACATCAAAGTCACTTCATTAACCGACAGCAAAAAAATCGTTAAGATTAAATTTGATCGGGATGTGGTGGAAC
CTAAAGGCTTTGTAACGGGCACTCCCCCTACTATAGCCTTGGATTTTGGTCAAACCGGCATTAATTTGGCTCAACAGGAC
TTCCAATACAATGACAGCTTGCTGGGTAAAATCTTAGCAGCCGAAAGTAATGGTCGGGCGCGTTTGGCCATCGATTTACG
CAGCAATAGTGAGTATTACACCGAGCGCAAAGGCGATGAGATTTGGGTTTACATCACCTCAAAAAATGCAATACCAAACA
TTACTGAATCAGTGAAAACTACTGCCACCAATACTTCTACCATCAAAAATAACAATGCTTCCTCGCAATTGTCATCAAAT
AACAGCGATGACATAGGCCACAGTGGTGTTGGCATTGACTTCAAAAAAGGCAATGGTGGGCGTGGTGAAGTGACCTTGAA
CTTACCGACACCAAATACTCGGTTTAATGTTCAAAAAAATAATGATCGATTGATTATTACTTTGCCAGATACCAGTATCA
ATGCCGCCGAACAGAAAAAATTGGATGTTACCACTTTTGGTACGCCAGTGCGCTTTGTAAACTTGACTCGTAACAATGCC
CAAACCCAGTTGGAAATAGTGACCTCTGGTCCTTGGTCTTATCAAAACAAATTGGAAAATGGCCGACAAGTCTTCCATAT
CCTGCCGCAAAGCAATATCGCACAAGCCGGTTTAATTAAAAAAAACCAAAACTTTAAAGGAACGCGTGTTACTTTAGACT
TTCAAGATGTTGAGGTACGTACCATCTTGCAAATTTTGGCTAAAGAATCTGGTATGAATATTGTTGCCAGCGATAGTGTT
AGAGGTAACATGACTATCAGTTTAAAAGATGTACCTTGGGATCAGGCATTACAATTAGTGATGGATTCTCGTAATTTAGA
CAAACGGCAAAATGGAAATATTATAAAGATCGCCCCTAGAGAAGAGTTAATAGCCCAAGAAAAAGAAGAATTAACAAATG
CGAAAGAATTAGAAAACTTGGGGCCGTTATTATCTCAATCATTTCAATTGAAATATAAAAGTGTTGAAGAGTTTAAAACC
GTCTTAGATATTAAAACTGGATCCTCTAATAGTGGAGATACAAAGTCCATCTTATCTGCTAGGGGATCAGCTTTAATTGA
TCCTGCAACCAATACTTTAATCATCAATGATGTTTCTTCTGTCATTAAAAAAATGCAAGCACTCGTTGAAGAACTTGATG
TTCCTTCACAACAAGTGATGGTAGAAGCTCGCATTGTATCTGCCACCACCAACTTTGGACGCGAACTTGGTGTTAGATGG
TTTGGTCAACATACAAGTTCTTCCACCAAACCGAGTACCGGAATTGGATCGGCAATTCCTTCATCTAACACAACCACAAC
GGGTAATAATGCGTGGGCTGGTCCAATGGGTTTTTCAAATTCTCCAAGTGTTAATTTAGGAGTACAAGCTGCAACTAGCA
GTATCGCCATTGTGCGACAAACTTTATCAGGTGCTTTGGGCTTGGAACTGTCTGCAGCAGAGTCAGAAGGAAAAACCAAA
ACCATTTCTAGCCCTCGTGTATTGACCCAAAATGGGAAAAAAGCTGAAATCAAATCCGGTACTGAAGTTCCTTACCAAGA
AGCAAGCTCTAGTGGGGCCACTTCTGTTTCATTTAAAGAGGCGGTTTTAGGTTTAACTGTCACCCCACGTATCACCCCTG
ATGGCAACATTATCATGGATTTAGATGTGACTAATGATTCGGTTGATTCAACTTGTACCGCTTCCGAACCATGTATCAAA
ACCAACAACCTGAACAGTACAGTGATGGTAGAAAATGGCGGTACAATTATTGTTGGCGGCATTTACAAACAAGATTTAAA
CAATGCCACGTCAAAAGTGCCATTACTAGGCGATATCCCTGTCTTGGGCAATTTGTTTAAATACCAGAAAAAAGTGGATA
ACCAAGAAGAATTACTGATTTTCATCACCCCTCGCATCATGAGTGCAACGGGCAGTAACTTGCGTTATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(552-707)

Bacterial type II/III secretion system short domain (Secretin_N)

(386-458)

Secretin and TonB N terminus short domain (STN)

(313-359)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

46.883

100

0.483
  pilQ Neisseria meningitidis MC58

49.819

77.095

0.384
  pilQ Neisseria meningitidis M1080

49.638

77.095

0.383