Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   LVJ88_RS07195 Genome accession   NZ_CP091509
Coordinates   1578723..1579106 (+) Length   127 a.a.
NCBI ID   WP_085417973.1    Uniprot ID   -
Organism   Neisseria dumasiana strain LMG 30012     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1578055..1578708 1578723..1579106 flank 15


Gene organization within MGE regions


Location: 1578055..1579106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ88_RS07190 (LVJ88_07190) - 1578055..1578708 (-) 654 WP_085417784.1 IS1595 family transposase -
  LVJ88_RS07195 (LVJ88_07195) comP 1578723..1579106 (+) 384 WP_085417973.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14411.35 Da        Isoelectric Point: 9.2939

>NTDB_id=651825 LVJ88_RS07195 WP_085417973.1 1578723..1579106(+) (comP) [Neisseria dumasiana strain LMG 30012]
MTANLRQPLKNTRLREAHTALIKNAQMMEQFYQQHRSFKLNSTTWPPLPETATGHFCIRPQGVARGAHDDKFTLKAVAFD
KNNEPRVLKINESLIAIVCESSASSCSDENHFFKGKSADKDCRIYSN

Nucleotide


Download         Length: 384 bp        

>NTDB_id=651825 LVJ88_RS07195 WP_085417973.1 1578723..1579106(+) (comP) [Neisseria dumasiana strain LMG 30012]
ATGACTGCTAATCTACGTCAGCCCCTTAAAAATACCCGCCTTCGCGAAGCTCACACCGCCCTAATAAAAAATGCCCAAAT
GATGGAGCAATTTTACCAGCAGCACCGTTCGTTTAAATTGAATTCAACAACTTGGCCGCCATTACCCGAAACCGCTACCG
GCCATTTCTGTATCCGTCCGCAAGGTGTCGCGCGTGGCGCACACGACGACAAATTTACTTTGAAAGCGGTTGCCTTTGAT
AAAAACAACGAACCGCGTGTATTAAAAATCAACGAATCTTTGATTGCCATAGTGTGCGAATCCAGCGCCAGCAGCTGCTC
GGATGAAAATCATTTTTTCAAAGGCAAGTCCGCCGATAAAGACTGCCGGATTTACAGCAACTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

49.194

97.638

0.48
  comP Neisseria meningitidis 8013

47.5

94.488

0.449
  comP Neisseria gonorrhoeae MS11

47.899

93.701

0.449