Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LVJ83_RS11675 Genome accession   NZ_CP091508
Coordinates   2542361..2542651 (-) Length   96 a.a.
NCBI ID   WP_244784473.1    Uniprot ID   -
Organism   Uruburuella testudinis strain CCUG 63373m     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2537361..2547651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ83_RS11640 (LVJ83_11640) - 2537403..2537792 (-) 390 WP_244784819.1 hypothetical protein -
  LVJ83_RS11645 (LVJ83_11645) - 2538513..2538659 (+) 147 WP_244784820.1 hypothetical protein -
  LVJ83_RS11650 (LVJ83_11650) rpmA 2539569..2539841 (-) 273 WP_244784822.1 50S ribosomal protein L27 -
  LVJ83_RS11655 (LVJ83_11655) rplU 2539868..2540176 (-) 309 WP_095503237.1 50S ribosomal protein L21 -
  LVJ83_RS11660 (LVJ83_11660) - 2540583..2541557 (+) 975 WP_244787774.1 polyprenyl synthetase family protein -
  LVJ83_RS11670 (LVJ83_11670) - 2541730..2541930 (+) 201 Protein_2283 hypothetical protein -
  LVJ83_RS11675 (LVJ83_11675) comE 2542361..2542651 (-) 291 WP_244784473.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10052.70 Da        Isoelectric Point: 10.5259

>NTDB_id=651800 LVJ83_RS11675 WP_244784473.1 2542361..2542651(-) (comE) [Uruburuella testudinis strain CCUG 63373m]
MKKLIWGALALISTGFSLAAVNINTAGEEELKALPGIGPSKAAAIVEYRSRNGNFKSVEELKNVKGIGDGIYNRLKDEAS
VSGAAAKKAKPALKKP

Nucleotide


Download         Length: 291 bp        

>NTDB_id=651800 LVJ83_RS11675 WP_244784473.1 2542361..2542651(-) (comE) [Uruburuella testudinis strain CCUG 63373m]
ATGAAAAAACTGATTTGGGGCGCACTGGCGCTGATAAGCACCGGCTTCTCGCTGGCGGCGGTCAACATCAACACCGCCGG
GGAAGAAGAGCTCAAAGCCCTGCCGGGCATCGGCCCCTCGAAAGCGGCGGCGATTGTAGAGTACCGCAGCCGCAATGGCA
ACTTCAAAAGTGTGGAGGAGCTGAAGAACGTGAAGGGGATCGGAGACGGTATTTACAACCGTCTGAAGGATGAGGCTTCG
GTATCGGGGGCGGCGGCGAAGAAGGCCAAGCCTGCGCTTAAGAAGCCGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

58.511

97.917

0.573
  comE Neisseria gonorrhoeae MS11

58.511

97.917

0.573
  comE Neisseria gonorrhoeae MS11

58.511

97.917

0.573
  comE Neisseria gonorrhoeae MS11

58.511

97.917

0.573
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.617

84.375

0.427