Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   L3080_RS11110 Genome accession   NZ_CP091465
Coordinates   2367485..2367895 (+) Length   136 a.a.
NCBI ID   WP_002017231.1    Uniprot ID   N9KEH5
Organism   Acinetobacter baumannii strain NCCP 16007     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2362485..2372895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3080_RS11095 - 2363474..2365780 (+) 2307 WP_000259109.1 RelA/SpoT family protein -
  L3080_RS11100 - 2365825..2366598 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  L3080_RS11105 mazG 2366710..2367516 (+) 807 WP_000359483.1 nucleoside triphosphate pyrophosphohydrolase -
  L3080_RS11110 comEA 2367485..2367895 (+) 411 WP_002017231.1 ComEA family DNA-binding protein Machinery gene
  L3080_RS11115 pcnB 2368020..2369483 (+) 1464 WP_001194207.1 polynucleotide adenylyltransferase PcnB -
  L3080_RS11120 folK 2369480..2369962 (+) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  L3080_RS11125 panB 2370008..2370817 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  L3080_RS11130 panC 2370821..2371669 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  L3080_RS11135 rapZ 2371692..2372543 (+) 852 WP_000821671.1 RNase adapter RapZ -
  L3080_RS11140 - 2372540..2372809 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15654.89 Da        Isoelectric Point: 10.3828

>NTDB_id=651490 L3080_RS11110 WP_002017231.1 2367485..2367895(+) (comEA) [Acinetobacter baumannii strain NCCP 16007]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=651490 L3080_RS11110 WP_002017231.1 2367485..2367895(+) (comEA) [Acinetobacter baumannii strain NCCP 16007]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KEH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.794

100

0.978
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412