Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   L3080_RS06445 Genome accession   NZ_CP091465
Coordinates   1381462..1382280 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain NCCP 16007     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1376462..1387280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3080_RS06430 pilE 1376679..1377104 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  L3080_RS06435 pilY2 1377101..1377583 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  L3080_RS06440 pilY1 1377596..1381450 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  L3080_RS06445 pilX 1381462..1382280 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L3080_RS06450 pilW 1382277..1383278 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  L3080_RS06455 pilV 1383279..1383839 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  L3080_RS06460 fimU 1383833..1384306 (-) 474 WP_001214061.1 pilus assembly FimT family protein Machinery gene
  L3080_RS06465 ispH 1384476..1385426 (-) 951 WP_083028594.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L3080_RS06470 gmk 1385549..1386178 (+) 630 WP_000015937.1 guanylate kinase -
  L3080_RS06475 rpoZ 1386251..1386529 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L3080_RS06480 - 1386568..1386697 (+) 130 Protein_1253 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=651464 L3080_RS06445 WP_000149374.1 1381462..1382280(-) (pilX) [Acinetobacter baumannii strain NCCP 16007]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=651464 L3080_RS06445 WP_000149374.1 1381462..1382280(-) (pilX) [Acinetobacter baumannii strain NCCP 16007]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993