Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   L3080_RS06435 Genome accession   NZ_CP091465
Coordinates   1377101..1377583 (-) Length   160 a.a.
NCBI ID   WP_001046420.1    Uniprot ID   A0A7U3Y2Y6
Organism   Acinetobacter baumannii strain NCCP 16007     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1372101..1382583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3080_RS06400 - 1372207..1373241 (+) 1035 WP_001189447.1 lipase secretion chaperone -
  L3080_RS06405 - 1373356..1374297 (+) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  L3080_RS06410 rplS 1374350..1374718 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  L3080_RS06415 trmD 1374927..1375667 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  L3080_RS06420 rimM 1375713..1376261 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  L3080_RS06425 rpsP 1376281..1376532 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  L3080_RS06430 pilE 1376679..1377104 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  L3080_RS06435 pilY2 1377101..1377583 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  L3080_RS06440 pilY1 1377596..1381450 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  L3080_RS06445 pilX 1381462..1382280 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17548.77 Da        Isoelectric Point: 8.4817

>NTDB_id=651462 L3080_RS06435 WP_001046420.1 1377101..1377583(-) (pilY2) [Acinetobacter baumannii strain NCCP 16007]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=651462 L3080_RS06435 WP_001046420.1 1377101..1377583(-) (pilY2) [Acinetobacter baumannii strain NCCP 16007]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y2Y6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

97.5

100

0.975
  comE Acinetobacter baylyi ADP1

40.116

100

0.431