Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   L3080_RS06460 Genome accession   NZ_CP091465
Coordinates   1383833..1384306 (-) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain NCCP 16007     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1378833..1389306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3080_RS06445 pilX 1381462..1382280 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L3080_RS06450 pilW 1382277..1383278 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  L3080_RS06455 pilV 1383279..1383839 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  L3080_RS06460 fimU 1383833..1384306 (-) 474 WP_001214061.1 pilus assembly FimT family protein Machinery gene
  L3080_RS06465 ispH 1384476..1385426 (-) 951 WP_083028594.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L3080_RS06470 gmk 1385549..1386178 (+) 630 WP_000015937.1 guanylate kinase -
  L3080_RS06475 rpoZ 1386251..1386529 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L3080_RS06480 - 1386568..1386697 (+) 130 Protein_1253 hypothetical protein -
  L3080_RS06485 - 1386737..1388842 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=651467 L3080_RS06460 WP_001214061.1 1383833..1384306(-) (fimU) [Acinetobacter baumannii strain NCCP 16007]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=651467 L3080_RS06460 WP_001214061.1 1383833..1384306(-) (fimU) [Acinetobacter baumannii strain NCCP 16007]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987