Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG485_RS23560 Genome accession   NZ_CP108013
Coordinates   5371723..5372406 (+) Length   227 a.a.
NCBI ID   WP_328670565.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00328     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5366723..5377406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG485_RS23545 (OG485_23565) - 5367951..5369516 (+) 1566 WP_328670562.1 sensor histidine kinase -
  OG485_RS23550 (OG485_23570) vraR 5369541..5370221 (+) 681 WP_328670563.1 response regulator transcription factor Regulator
  OG485_RS23555 (OG485_23575) - 5370359..5371726 (+) 1368 WP_328670564.1 histidine kinase -
  OG485_RS23560 (OG485_23580) vraR 5371723..5372406 (+) 684 WP_328670565.1 response regulator transcription factor Regulator
  OG485_RS23565 (OG485_23585) - 5372475..5373695 (+) 1221 WP_328670566.1 cytochrome P450 -
  OG485_RS23570 (OG485_23590) - 5373921..5375534 (-) 1614 WP_328670567.1 ABC transporter permease -
  OG485_RS23575 (OG485_23595) - 5375531..5376526 (-) 996 WP_328670568.1 ABC transporter ATP-binding protein -
  OG485_RS23580 (OG485_23600) - 5376629..5377129 (+) 501 WP_328670569.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24545.26 Da        Isoelectric Point: 4.8723

>NTDB_id=651434 OG485_RS23560 WP_328670565.1 5371723..5372406(+) (vraR) [Streptomyces sp. NBC_00328]
MTDGTGRAIRVLIADDQMMVREGFSVLLGAMPDIEVVGEAVNGREAVDRVRELRPDVVLMDIRMPEMNGIDATREIVAAD
GAAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVSAGEALLAPSVTKRLITEFSKLAEEPRLSATAHGA
YGDLTDRETEVLVLIAQGLSNAEIAQRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPR

Nucleotide


Download         Length: 684 bp        

>NTDB_id=651434 OG485_RS23560 WP_328670565.1 5371723..5372406(+) (vraR) [Streptomyces sp. NBC_00328]
ATGACGGACGGTACGGGTCGCGCGATCCGTGTGCTGATCGCCGACGACCAGATGATGGTCCGCGAGGGCTTCTCCGTACT
GCTCGGCGCGATGCCGGACATCGAGGTGGTCGGCGAGGCGGTCAACGGCCGGGAGGCGGTCGACCGGGTCCGCGAGCTGC
GCCCGGACGTCGTGCTGATGGACATCCGTATGCCGGAGATGAACGGCATCGACGCGACCCGGGAGATCGTCGCCGCGGAC
GGTGCCGCGAAGGTGCTGGTGCTGACGACGTTCGACCTCGACGAGTACGTGTACCAGGCGCTGCGCGCGGGGGCGTCCGG
TTTCCTGCTCAAGGACGCCTCGGCCCGCCAGCTCGCCGACGGGGTGAGGGTCGTGTCGGCCGGGGAGGCGCTGCTCGCCC
CCTCGGTCACCAAGCGGCTGATCACGGAGTTCTCCAAGCTCGCGGAGGAGCCCCGGCTGTCGGCGACGGCGCACGGGGCG
TACGGGGATCTCACCGACCGGGAGACGGAGGTGCTGGTGCTGATCGCGCAGGGGCTGTCGAACGCGGAGATCGCCCAGCG
GCTCGTCGTCGCGGAGTCGACGATCAAGACCCATGTGAGCCGCATCCTGGTGAAACTGGGCCTGCGGGACCGGACACAGG
CCGCGGTGTTCGCCTACGAGGCCCGCCTGGTCACCCCCAGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(11-120)

Bacterial regulatory proteins, luxR family (GerE)

(164-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.444

95.154

0.423
  degU Bacillus subtilis subsp. subtilis str. 168

40.708

99.559

0.405