Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG485_RS23550 Genome accession   NZ_CP108013
Coordinates   5369541..5370221 (+) Length   226 a.a.
NCBI ID   WP_328670563.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00328     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5364541..5375221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG485_RS23535 (OG485_23555) - 5365630..5366634 (+) 1005 WP_328670561.1 alpha/beta hydrolase -
  OG485_RS23540 (OG485_23560) - 5366645..5367886 (+) 1242 WP_328674606.1 acyltransferase -
  OG485_RS23545 (OG485_23565) - 5367951..5369516 (+) 1566 WP_328670562.1 sensor histidine kinase -
  OG485_RS23550 (OG485_23570) vraR 5369541..5370221 (+) 681 WP_328670563.1 response regulator transcription factor Regulator
  OG485_RS23555 (OG485_23575) - 5370359..5371726 (+) 1368 WP_328670564.1 histidine kinase -
  OG485_RS23560 (OG485_23580) vraR 5371723..5372406 (+) 684 WP_328670565.1 response regulator transcription factor Regulator
  OG485_RS23565 (OG485_23585) - 5372475..5373695 (+) 1221 WP_328670566.1 cytochrome P450 -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24408.08 Da        Isoelectric Point: 5.1154

>NTDB_id=651433 OG485_RS23550 WP_328670563.1 5369541..5370221(+) (vraR) [Streptomyces sp. NBC_00328]
MTTVSGTIRVLIADDQQMVRQGFTVLLNANPGIEVIGQAVDGLDAVRQVAELAPDVVLMDIRMPELGGIEATRRITTDTP
HIKVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDSTPRAPLKQRVGD
LTERETEVLAHIAQGLSNAEIAQRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPTGY

Nucleotide


Download         Length: 681 bp        

>NTDB_id=651433 OG485_RS23550 WP_328670563.1 5369541..5370221(+) (vraR) [Streptomyces sp. NBC_00328]
ATGACGACCGTGAGCGGCACCATCCGCGTTCTGATCGCCGACGACCAGCAGATGGTCCGCCAGGGATTCACCGTGCTGCT
CAACGCGAACCCGGGCATCGAGGTGATCGGCCAGGCGGTCGACGGACTCGACGCGGTCCGCCAGGTCGCCGAACTCGCGC
CGGACGTCGTCCTGATGGACATCCGCATGCCCGAACTCGGCGGCATCGAGGCGACCCGCCGCATCACGACGGACACCCCG
CACATCAAGGTCCTGGTGCTCACCACGTTCGACCTCGACGAGTACGTCTACGAAGCCCTGCGCGCCGGTGCCTCCGGCTT
CCTCCTCAAGGACGCCTCGGCCGATCAACTCGCCGAGGCGGTCCGTGTGGTGGCCGCCGGCGACGCCCTCCTCGCCCCCG
GCATCACCCGCCGCCTCATCGCCGAGTTCTCCCGCCTCGACTCCACCCCGCGCGCTCCCCTCAAGCAACGCGTGGGTGAT
CTCACCGAACGCGAGACCGAGGTCCTGGCCCATATCGCCCAGGGTCTCTCCAACGCCGAGATCGCCCAGCGTCTGGTGGT
GGCCGAGCAGACGGTGAAAACCCACGTCGGCCGCATCCTCGTCAAACTGGGCCTGCGCGACCGCACCCAGGCGGCGGTCT
TCGCCTACGAATCGGGGCTGGTCCGCCCCACCGGCTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(10-122)

Bacterial regulatory proteins, luxR family (GerE)

(161-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.056

95.575

0.412
  degU Bacillus subtilis subsp. subtilis str. 168

41.704

98.673

0.412