Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   LGY76_RS17430 Genome accession   NZ_CP091452
Coordinates   3583063..3583545 (-) Length   160 a.a.
NCBI ID   WP_001046420.1    Uniprot ID   A0A7U3Y2Y6
Organism   Acinetobacter baumannii strain AB329     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3578063..3588545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGY76_RS17395 - 3578169..3579203 (+) 1035 WP_001189447.1 lipase secretion chaperone -
  LGY76_RS17400 - 3579318..3580259 (+) 942 WP_085916958.1 triacylglycerol lipase -
  LGY76_RS17405 rplS 3580312..3580680 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  LGY76_RS17410 trmD 3580889..3581629 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LGY76_RS17415 rimM 3581675..3582223 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  LGY76_RS17420 rpsP 3582243..3582494 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  LGY76_RS17425 pilE 3582641..3583066 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  LGY76_RS17430 pilY2 3583063..3583545 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  LGY76_RS17435 pilY1 3583558..3587412 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  LGY76_RS17440 pilX 3587424..3588242 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17548.77 Da        Isoelectric Point: 8.4817

>NTDB_id=651408 LGY76_RS17430 WP_001046420.1 3583063..3583545(-) (pilY2) [Acinetobacter baumannii strain AB329]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=651408 LGY76_RS17430 WP_001046420.1 3583063..3583545(-) (pilY2) [Acinetobacter baumannii strain AB329]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y2Y6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

97.5

100

0.975
  comE Acinetobacter baylyi ADP1

40.116

100

0.431