Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG485_RS11895 Genome accession   NZ_CP108013
Coordinates   2715922..2716563 (-) Length   213 a.a.
NCBI ID   WP_328668070.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00328     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2710922..2721563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG485_RS11865 (OG485_11880) - 2711436..2712395 (-) 960 WP_328668065.1 SPFH domain-containing protein -
  OG485_RS11870 (OG485_11885) - 2712526..2712960 (-) 435 WP_328668066.1 NfeD family protein -
  OG485_RS11875 (OG485_11890) - 2713057..2713848 (-) 792 WP_328453994.1 ABC transporter ATP-binding protein -
  OG485_RS11880 (OG485_11895) - 2713970..2714758 (+) 789 WP_328668067.1 hypothetical protein -
  OG485_RS11885 (OG485_11900) - 2715093..2715332 (-) 240 WP_328668068.1 chaplin -
  OG485_RS11890 (OG485_11905) - 2715531..2715776 (-) 246 WP_328668069.1 chaplin -
  OG485_RS11895 (OG485_11910) vraR 2715922..2716563 (-) 642 WP_328668070.1 response regulator transcription factor Regulator
  OG485_RS11900 (OG485_11915) - 2716556..2717722 (-) 1167 WP_328668071.1 GAF domain-containing sensor histidine kinase -
  OG485_RS11905 (OG485_11920) - 2717906..2718601 (+) 696 WP_328668072.1 SDR family NAD(P)-dependent oxidoreductase -
  OG485_RS11910 (OG485_11925) - 2718610..2719722 (+) 1113 WP_328674332.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OG485_RS11915 (OG485_11930) - 2720014..2720781 (+) 768 WP_328668073.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22946.24 Da        Isoelectric Point: 5.1544

>NTDB_id=651409 OG485_RS11895 WP_328668070.1 2715922..2716563(-) (vraR) [Streptomyces sp. NBC_00328]
MADAIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEASDGAEGVARAEELKPDIVLMDVKMPGMDGIDALRKLSELANPAR
VLIVTSFTERRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHVVLQSEVASALLSQEEVNSGQGRGVSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGIAD

Nucleotide


Download         Length: 642 bp        

>NTDB_id=651409 OG485_RS11895 WP_328668070.1 2715922..2716563(-) (vraR) [Streptomyces sp. NBC_00328]
GTGGCTGACGCAATCAAGGTGCTGCTCGTCGACGACCATCAGGTCGTCCGCCGGGGACTGCGCACCTTCCTGGAAGTCCA
GGACGACATCGAGGTCGTCGGGGAGGCGTCCGACGGAGCCGAAGGCGTCGCCCGCGCCGAGGAGTTGAAACCGGACATCG
TGCTCATGGACGTCAAGATGCCGGGGATGGACGGCATCGACGCGCTGCGCAAGCTCAGTGAACTCGCCAACCCCGCGCGC
GTGCTGATCGTCACCAGTTTCACCGAGCGGCGCACGGTGGTGCCGGCCCTGCGCGCGGGCGCCGCCGGGTATGTCTACAA
GGACGTCGACCCGGACGCGCTGGCCGGGGCCATCCGCTCGGTCCATGCGGGACACGTCGTCCTGCAATCCGAGGTCGCGA
GCGCCCTGCTGTCCCAGGAAGAGGTCAACTCGGGCCAGGGGAGAGGTGTTTCGCTCACCGAACGGGAGCGGGAGGTGCTC
GGCCTGATCGCGGACGGCCGCTCCAACCGGGAGATCGCCCGCGCCCTCGTCCTCTCCGAGAAGACGGTGAAGACCCACGT
CTCGAACATCCTGATGAAACTCGACCTCGCCGACCGGACCCAGGCCGCGCTCTGGGCGGTGCGGCACGGAATCGCGGACT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.498

99.061

0.451
  degU Bacillus subtilis subsp. subtilis str. 168

38.462

100

0.399