Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   L3475_RS10890 Genome accession   NZ_CP091451
Coordinates   2102174..2102932 (+) Length   252 a.a.
NCBI ID   WP_000410376.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 3238/09     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2097174..2107932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3475_RS10860 (L3475_10780) comE 2097771..2098523 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  L3475_RS10865 (L3475_10785) comD/comD1 2098520..2099845 (-) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  L3475_RS10870 (L3475_10790) comC/comC1 2099866..2099991 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  L3475_RS10880 (L3475_10800) rlmH 2100273..2100752 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  L3475_RS10885 (L3475_10805) htrA 2100935..2102116 (+) 1182 WP_000681597.1 S1C family serine protease Regulator
  L3475_RS10890 (L3475_10810) spo0J 2102174..2102932 (+) 759 WP_000410376.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29130.48 Da        Isoelectric Point: 8.0022

>NTDB_id=651374 L3475_RS10890 WP_000410376.1 2102174..2102932(+) (spo0J) [Streptococcus pneumoniae strain 3238/09]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEACAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=651374 L3475_RS10890 WP_000410376.1 2102174..2102932(+) (spo0J) [Streptococcus pneumoniae strain 3238/09]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCATG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAAATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504