Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHB16_RS25060 Genome accession   NZ_CP108008
Coordinates   5391030..5391674 (+) Length   214 a.a.
NCBI ID   WP_271320465.1    Uniprot ID   A0ABV9WQX2
Organism   Streptomyces sp. NBC_00334     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5386030..5396674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB16_RS25040 (OHB16_25045) - 5386040..5387932 (-) 1893 WP_328659370.1 ABC transporter ATP-binding protein -
  OHB16_RS25045 (OHB16_25050) - 5388103..5389005 (+) 903 WP_271320462.1 ABC transporter ATP-binding protein -
  OHB16_RS25050 (OHB16_25055) - 5389002..5389760 (+) 759 WP_271320463.1 ABC transporter permease -
  OHB16_RS25055 (OHB16_25060) - 5389787..5391040 (+) 1254 WP_328659373.1 sensor histidine kinase -
  OHB16_RS25060 (OHB16_25065) vraR 5391030..5391674 (+) 645 WP_271320465.1 response regulator transcription factor Regulator
  OHB16_RS25065 (OHB16_25070) glgX 5391786..5394044 (-) 2259 WP_328659376.1 glycogen debranching protein GlgX -
  OHB16_RS25070 (OHB16_25075) - 5394200..5395450 (+) 1251 WP_271320467.1 Ig-like domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 22571.83 Da        Isoelectric Point: 6.2648

>NTDB_id=651370 OHB16_RS25060 WP_271320465.1 5391030..5391674(+) (vraR) [Streptomyces sp. NBC_00334]
MTDDAVISLLVVDDHPVVRDGLRGMFESAPGFRVLGEAASGVEALERAAALDPDVILMDLRMPGGSGVDAIRELTRRGAR
ARVLVLTTYDTDSDTLPAIEAGATGYLLKDALRDDLFTAVRAAARGRTVLSPAVASRLVSAVRAPKAPGGEPLSAREREV
LALVARGTSNKEIARELFISEATVKTHLTHLYAKLGVSDRAAAVATAYERGILG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=651370 OHB16_RS25060 WP_271320465.1 5391030..5391674(+) (vraR) [Streptomyces sp. NBC_00334]
ATGACCGATGACGCCGTGATCTCCCTCCTCGTCGTCGACGACCACCCGGTCGTCCGCGACGGCCTGCGCGGCATGTTCGA
GTCCGCGCCCGGCTTCCGCGTCCTGGGCGAGGCGGCGAGCGGCGTCGAGGCGCTGGAACGGGCCGCCGCGCTCGACCCCG
ACGTGATCCTCATGGACCTGCGGATGCCGGGCGGTTCGGGCGTGGACGCCATCCGCGAGCTGACCCGGCGCGGCGCCCGC
GCGAGGGTCCTCGTGCTCACCACGTACGACACCGACTCCGACACCCTGCCCGCGATCGAGGCCGGCGCGACCGGCTACCT
CCTCAAGGACGCGCTCCGCGACGACCTGTTCACCGCGGTCCGCGCGGCGGCCCGGGGGCGTACGGTCCTCTCCCCGGCGG
TCGCCTCCCGGCTGGTCTCCGCCGTCCGCGCCCCGAAGGCCCCCGGCGGCGAGCCCCTCTCCGCCCGCGAGCGCGAGGTG
CTCGCCCTGGTGGCGCGCGGCACCTCCAACAAGGAGATCGCCCGGGAGCTGTTCATCAGCGAGGCGACCGTGAAGACCCA
CCTCACCCACCTGTACGCGAAGCTCGGCGTGAGCGACCGGGCGGCGGCCGTCGCGACGGCGTACGAGCGGGGCATCCTCG
GCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-206)

Response regulator receiver domain (Response_reg)

(10-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.164

96.729

0.369