Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA37_RS17665 Genome accession   NZ_CP108006
Coordinates   3964973..3965632 (+) Length   219 a.a.
NCBI ID   WP_266906319.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00335     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3959973..3970632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA37_RS17645 (OHA37_17645) - 3960157..3961464 (+) 1308 WP_266906311.1 acyltransferase -
  OHA37_RS17650 (OHA37_17650) - 3961457..3962890 (+) 1434 WP_266906313.1 histidine kinase -
  OHA37_RS17655 (OHA37_17655) vraR 3962887..3963561 (+) 675 WP_266906315.1 response regulator transcription factor Regulator
  OHA37_RS17660 (OHA37_17660) - 3963651..3964976 (+) 1326 WP_266906317.1 histidine kinase -
  OHA37_RS17665 (OHA37_17665) vraR 3964973..3965632 (+) 660 WP_266906319.1 response regulator transcription factor Regulator
  OHA37_RS17670 (OHA37_17670) - 3965924..3966541 (-) 618 WP_266906321.1 hypothetical protein -
  OHA37_RS17675 (OHA37_17675) - 3966658..3967044 (-) 387 WP_266906323.1 hypothetical protein -
  OHA37_RS17680 (OHA37_17680) - 3967065..3968018 (-) 954 WP_266912888.1 diacylglycerol kinase -
  OHA37_RS17685 (OHA37_17685) - 3968203..3969486 (+) 1284 WP_266906325.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23626.33 Da        Isoelectric Point: 4.5705

>NTDB_id=651255 OHA37_RS17665 WP_266906319.1 3964973..3965632(+) (vraR) [Streptomyces sp. NBC_00335]
MTIRVLIVDDQMMVREGFSVLLNAMEGIEVAGEAVNGREAIAQVAALKPDVVLMDIRMPEMNGLEATREIVAADTDAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLITEFSKLSETRTQVGSAGVTELTERE
TEVLVLIAQGLSNAEIADRLIIAESTIKTHVSRILVKLGLRDRTQAAVFAYETRLVTPA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=651255 OHA37_RS17665 WP_266906319.1 3964973..3965632(+) (vraR) [Streptomyces sp. NBC_00335]
ATGACGATCAGAGTGCTCATCGTCGACGACCAGATGATGGTCCGTGAGGGCTTCTCCGTCCTGCTGAACGCGATGGAAGG
CATCGAAGTGGCCGGGGAGGCGGTGAACGGGCGGGAGGCCATCGCCCAAGTGGCGGCGCTGAAGCCGGATGTGGTGCTGA
TGGACATCCGGATGCCGGAGATGAACGGCCTGGAGGCGACCCGGGAGATCGTGGCCGCCGACACGGACGCGAAGGTGCTG
GTCCTGACGACCTTCGACCTCGACGAGTACGTGTACCAGGCCCTGCGCGCCGGGGCCTCCGGGTTCCTCCTCAAGGACGC
CTCCGCCCGCCAACTGGCCGACGGAGTCAGGGTGGTGGCGGCCGGGGAGGCGCTGCTGGCGCCTTCCGTGACCAAGCGGC
TGATCACGGAGTTCTCGAAGTTGTCGGAGACCCGGACGCAGGTGGGCTCCGCGGGGGTCACGGAGCTGACGGAGCGGGAG
ACCGAGGTGCTGGTGCTGATCGCACAGGGGTTGTCCAACGCGGAGATAGCGGATCGCCTGATCATCGCCGAGTCCACCAT
CAAGACGCACGTGAGCCGGATCCTGGTGAAGCTGGGACTGCGGGACCGCACGCAGGCGGCGGTGTTCGCGTACGAGACCC
GGCTGGTGACGCCCGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.833

98.63

0.452
  degU Bacillus subtilis subsp. subtilis str. 168

39.91

100

0.406