Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA37_RS17655 Genome accession   NZ_CP108006
Coordinates   3962887..3963561 (+) Length   224 a.a.
NCBI ID   WP_266906315.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00335     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3957887..3968561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA37_RS17635 (OHA37_17635) - 3958163..3958786 (-) 624 WP_266906307.1 hypothetical protein -
  OHA37_RS17640 (OHA37_17640) - 3959091..3960170 (+) 1080 WP_266906309.1 alpha/beta hydrolase -
  OHA37_RS17645 (OHA37_17645) - 3960157..3961464 (+) 1308 WP_266906311.1 acyltransferase -
  OHA37_RS17650 (OHA37_17650) - 3961457..3962890 (+) 1434 WP_266906313.1 histidine kinase -
  OHA37_RS17655 (OHA37_17655) vraR 3962887..3963561 (+) 675 WP_266906315.1 response regulator transcription factor Regulator
  OHA37_RS17660 (OHA37_17660) - 3963651..3964976 (+) 1326 WP_266906317.1 histidine kinase -
  OHA37_RS17665 (OHA37_17665) vraR 3964973..3965632 (+) 660 WP_266906319.1 response regulator transcription factor Regulator
  OHA37_RS17670 (OHA37_17670) - 3965924..3966541 (-) 618 WP_266906321.1 hypothetical protein -
  OHA37_RS17675 (OHA37_17675) - 3966658..3967044 (-) 387 WP_266906323.1 hypothetical protein -
  OHA37_RS17680 (OHA37_17680) - 3967065..3968018 (-) 954 WP_266912888.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 23853.70 Da        Isoelectric Point: 4.7032

>NTDB_id=651254 OHA37_RS17655 WP_266906315.1 3962887..3963561(+) (vraR) [Streptomyces sp. NBC_00335]
MTAAPIKVMIADDQMMVRQGFTVLLDAQPDIEVVGQAVDGAEAVAKVAELAPDVVLMDIRMPGMGGIEATSLITAVPGSA
VKVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVIAAGEALLAPNITKRLITEFSRLGAPRAPSKARIDELT
ERETEVLSLVAQGMSNAEIARHLVLAEQTVKTHVGRILVKLGLRDRTQAAVFAYETGLIRPTGY

Nucleotide


Download         Length: 675 bp        

>NTDB_id=651254 OHA37_RS17655 WP_266906315.1 3962887..3963561(+) (vraR) [Streptomyces sp. NBC_00335]
ATGACTGCTGCCCCGATCAAGGTGATGATCGCCGACGACCAGATGATGGTCCGCCAGGGCTTCACCGTGCTCCTCGACGC
CCAGCCCGACATCGAGGTCGTCGGTCAGGCCGTCGACGGCGCCGAGGCCGTGGCCAAGGTCGCCGAACTGGCCCCGGACG
TGGTCCTGATGGACATCCGGATGCCCGGGATGGGCGGGATCGAGGCCACCTCCCTCATCACCGCCGTCCCGGGCTCCGCG
GTGAAGGTGCTGGTGCTGACCACCTTCGACCTCGACGAGTACGTGTACGAGGCGCTGCGCGCCGGCGCCTCGGGGTTCCT
CCTCAAGGACGCCTCCGCCGATCAGCTGGCGGAGGCGGTCCGCGTCATCGCTGCCGGGGAAGCCCTCCTCGCGCCGAACA
TCACGAAGCGGCTGATCACCGAGTTCTCCCGGCTGGGAGCTCCGCGGGCGCCTTCGAAGGCGCGGATCGACGAGCTGACG
GAGCGGGAGACGGAGGTCCTGTCGCTGGTCGCCCAGGGCATGTCGAACGCGGAGATCGCCCGGCACCTGGTCCTGGCCGA
GCAGACGGTCAAAACGCACGTGGGCCGGATCCTGGTGAAGCTGGGCCTGCGGGACCGCACGCAGGCGGCGGTGTTCGCGT
ACGAGACGGGCCTGATCCGTCCGACGGGCTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-121)

Bacterial regulatory proteins, luxR family (GerE)

(158-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.7

96.875

0.433
  degU Bacillus subtilis subsp. subtilis str. 168

42.667

100

0.429