Detailed information NTG0651160

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L3Q70_RS02635
• Genome accession: NZ_CP091442
• Coordinates: 551822..552718 (-)
• Length: 298 a.a.
• NCBI ID: WP_276574952.1
• Uniprot ID: -
• Organism: Pseudoalteromonas sp. CF6-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 546822..557718

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L3Q70_RS02610 (L3Q70_02610)	-	547615..548304 (-)	690	WP_062570060.1	response regulator transcription factor	-
L3Q70_RS02615 (L3Q70_02615)	-	548476..549006 (+)	531	WP_062570061.1	Spy/CpxP family protein refolding chaperone	-
L3Q70_RS02620 (L3Q70_02620)	yacG	549056..549289 (-)	234	WP_062570062.1	DNA gyrase inhibitor YacG	-
L3Q70_RS02625 (L3Q70_02625)	pilB	549363..551039 (-)	1677	WP_062570063.1	type IV-A pilus assembly ATPase PilB	Machinery gene
L3Q70_RS02630 (L3Q70_02630)	coaE	551214..551819 (-)	606	WP_237114808.1	dephospho-CoA kinase	-
L3Q70_RS02635 (L3Q70_02635)	pilD	551822..552718 (-)	897	WP_276574952.1	A24 family peptidase	Machinery gene
L3Q70_RS02640 (L3Q70_02640)	pilC	553097..554326 (-)	1230	WP_237114809.1	type II secretion system F family protein	Machinery gene
L3Q70_RS02645 (L3Q70_02645)	-	554556..554975 (-)	420	WP_237114810.1	pilin	-
L3Q70_RS02650 (L3Q70_02650)	nadC	555469..556317 (-)	849	WP_237114811.1	carboxylating nicotinate-nucleotide diphosphorylase	-
L3Q70_RS02655 (L3Q70_02655)	ampD	556469..557011 (+)	543	WP_237114812.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-

Sequence

Protein

• Length: 298 a.a.
• Molecular weight: 33051.34 Da
• Isoelectric Point: 5.7433

>NTDB_id=651160 L3Q70_RS02635 WP_276574952.1 551822..552718(-) (pilD) [Pseudoalteromonas sp. CF6-2]
MQNFFLDIATVMQSQPWFYFLTVGLVSLCIGSFLNVVIYRLPLMMKREWQSECRVLLADELPSQNTTEQAPFNLVTPNST
CPKCKSPIKVWQNIPVISWLLLKGRCDSCKTAISVRYPIIEMLTAGLSLVVASLFGATELALLYIFITWVLIALTFIDID
HMLLPDQLTLPLVWLTLIAAVMDITIAPSDAIIGAAVGYLSLWSVYWLFKLATGKEGMGYGDFKLLAVFGGLLGWQSILT
IVLLSSVVGAIIGIAQIILQGKDKTTPIPFGPYLAIAGWVTLLWGEQIQAYYFSYLGH

Nucleotide

• Length: 897 bp

>NTDB_id=651160 L3Q70_RS02635 WP_276574952.1 551822..552718(-) (pilD) [Pseudoalteromonas sp. CF6-2]
ATGCAAAATTTCTTTCTTGATATTGCCACTGTAATGCAAAGCCAACCGTGGTTTTATTTTTTAACTGTTGGGCTGGTTAG
CCTGTGTATTGGCAGTTTTTTAAATGTGGTAATTTATAGGTTACCACTGATGATGAAACGAGAATGGCAATCGGAATGCC
GTGTTTTATTAGCTGATGAATTACCATCTCAAAATACCACAGAGCAGGCACCGTTTAATTTAGTTACACCAAATTCGACC
TGTCCAAAATGCAAATCACCTATTAAGGTGTGGCAGAATATTCCTGTTATTAGTTGGTTATTACTTAAAGGTCGCTGTGA
CAGTTGTAAAACAGCGATTTCTGTACGCTACCCAATCATAGAAATGCTCACTGCAGGGTTAAGCCTTGTGGTGGCATCAC
TCTTTGGTGCGACAGAGCTTGCCTTACTTTATATTTTCATTACTTGGGTACTTATTGCTTTAACATTTATTGATATCGAT
CATATGTTACTCCCCGACCAACTCACTCTTCCACTGGTGTGGCTCACCCTCATTGCAGCAGTCATGGATATCACCATTGC
CCCTTCTGACGCCATTATTGGCGCAGCCGTTGGTTACTTGAGTTTGTGGAGTGTTTATTGGTTATTTAAGCTAGCAACCG
GTAAAGAAGGTATGGGATATGGTGACTTTAAGCTTTTAGCTGTATTTGGTGGCTTACTAGGTTGGCAATCAATCTTAACC
ATTGTATTGCTTTCAAGTGTGGTGGGCGCAATCATTGGTATTGCTCAAATTATTCTGCAAGGTAAAGATAAAACGACCCC
GATTCCATTTGGCCCTTACCTTGCGATTGCTGGCTGGGTTACTTTACTGTGGGGTGAACAAATACAAGCTTACTACTTTA
GCTATTTAGGTCACTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (26-133)

• Type IV leader peptidase family (Peptidase_A24) (146-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.804	94.295	0.517
pilD	Vibrio campbellii strain DS40M4	53.147	95.973	0.51
pilD	Acinetobacter baumannii D1279779	54.545	92.282	0.503
pilD	Acinetobacter nosocomialis M2	54.182	92.282	0.5
pilD	Neisseria gonorrhoeae MS11	44.922	85.906	0.386