Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHS16_RS21825 Genome accession   NZ_CP107996
Coordinates   4856167..4858089 (-) Length   640 a.a.
NCBI ID   WP_328538919.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00344     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4851167..4863089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS16_RS21810 (OHS16_21810) - 4851366..4852628 (+) 1263 WP_328538916.1 FAD-dependent oxidoreductase -
  OHS16_RS21815 (OHS16_21815) dnaG 4852814..4854727 (+) 1914 WP_328538917.1 DNA primase -
  OHS16_RS21820 (OHS16_21820) - 4854856..4856100 (+) 1245 WP_328538918.1 sigma-70 family RNA polymerase sigma factor -
  OHS16_RS21825 (OHS16_21825) rcrQ 4856167..4858089 (-) 1923 WP_328538919.1 ABC transporter ATP-binding protein Regulator
  OHS16_RS21830 (OHS16_21830) rcrP 4858089..4859822 (-) 1734 WP_328538920.1 ABC transporter ATP-binding protein Regulator
  OHS16_RS21835 (OHS16_21835) - 4859948..4861393 (-) 1446 WP_328538921.1 FGGY family carbohydrate kinase -
  OHS16_RS21840 (OHS16_21840) - 4861455..4861754 (-) 300 WP_328538922.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 69198.82 Da        Isoelectric Point: 5.7475

>NTDB_id=650942 OHS16_RS21825 WP_328538919.1 4856167..4858089(-) (rcrQ) [Streptomyces sp. NBC_00344]
MAGPGGRMMAGPVQKSTDFKGSGKRLLRMLAHDRPAMFTMLTAVIGSVALSVVGPKILGRATDLVFSGIVGRQLPKGITK
AQALQGLRDRGQGGMADMLGGISFTPGQGIDFTEVGKVLLLALAAFVCAGLLMLVATRMVARIVNQTVYRMREDIQGKLS
TLPLSYYDKQKRGEVLSRTTNDVDNIGQTMQQTMGQLINSLLTIIGVLVMMFWISWILALVALVTVPLSVVVATRVGKRS
QPQFVQQWKVTGKLNAHIEEMYTGHALVKVFGRQDESAEAFREQNDALYDASFKAQFNSGIMQPLMMFVSNINYVLVAVV
GGLRVATGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQAPDSVSAGRPDDLRGSISLEKV
SFRYEPDKPLIDDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTDGRIMLDGADIAKMSREELRSGIGMVLQDTWL
FGGTIADNIAYGASRQVTREEVEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGAIVEQGSHDELLAADGAYARLYAAQFAQAVVEVE

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=650942 OHS16_RS21825 WP_328538919.1 4856167..4858089(-) (rcrQ) [Streptomyces sp. NBC_00344]
ATGGCGGGTCCTGGTGGACGCATGATGGCAGGGCCCGTCCAGAAGTCCACGGACTTCAAGGGGTCGGGCAAACGGCTGCT
GCGGATGCTCGCGCATGACCGCCCGGCCATGTTCACGATGCTGACCGCGGTCATAGGCAGCGTCGCGCTCTCGGTGGTCG
GGCCTAAGATCCTGGGCCGGGCGACCGACCTGGTCTTCTCCGGGATCGTCGGCCGGCAGTTGCCGAAGGGCATCACCAAG
GCGCAGGCGCTCCAGGGGCTGCGCGACCGCGGCCAGGGCGGGATGGCCGACATGCTCGGCGGCATCAGCTTCACGCCGGG
CCAGGGCATCGACTTCACCGAGGTCGGCAAGGTCCTGCTCCTCGCGCTCGCGGCCTTCGTGTGTGCGGGACTGCTGATGC
TGGTGGCCACCCGGATGGTGGCGCGGATCGTCAACCAGACCGTGTACCGGATGCGCGAGGACATCCAGGGGAAGCTGTCG
ACGCTGCCGCTGTCGTACTACGACAAGCAGAAGCGCGGCGAGGTGCTGAGCCGCACCACGAACGACGTCGACAACATCGG
CCAGACCATGCAGCAGACGATGGGCCAGCTCATCAACTCGCTGCTGACCATCATCGGTGTGCTGGTGATGATGTTCTGGA
TCTCCTGGATCCTCGCCCTGGTCGCGCTGGTGACGGTGCCGCTGTCGGTCGTGGTCGCGACGCGGGTCGGCAAGCGGTCA
CAGCCGCAGTTCGTGCAGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGTCACGCCCT
CGTGAAGGTCTTCGGACGGCAGGACGAGTCGGCCGAGGCCTTCCGCGAGCAGAACGACGCCCTGTACGACGCGAGCTTCA
AGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTCTCGAACATCAACTACGTGCTGGTGGCGGTCGTC
GGCGGTCTGCGGGTCGCCACCGGCTCCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGAT
GCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCCGGTGTCGCGTCCGCCGAGCGGATCTTCGAACTGCTCG
ACGCCGAGGAGCAGGCGCCGGACTCCGTGTCCGCAGGCCGGCCCGACGATCTGCGCGGCAGCATCTCGCTGGAGAAGGTC
TCCTTCCGCTACGAGCCGGACAAGCCGCTGATCGACGATCTTTCGCTGTCGGTCGAGCCGGGCCACACGGTGGCGATCGT
CGGTCCGACCGGCGCGGGCAAGACGACTCTGGTGAATCTGCTGATGCGGTTCTACGAGGTGACCGACGGCCGGATCATGC
TCGACGGCGCCGACATCGCGAAGATGTCACGCGAGGAACTGCGTTCGGGTATCGGCATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGCACCATCGCGGACAACATCGCGTACGGGGCCTCCCGCCAGGTGACCCGCGAGGAGGTCGAGGAAGCCGCCAG
GGCTGCCCATGCCGACCGCTTCATCCGCACCCTGCCGGACGGGTACGACACGGTGATCGACGACGAGGGCACGGGGGTGA
GCGCGGGCGAGAAGCAGCTGATCACGATCGCGCGGGCCTTCCTGTCCGACCCGGTGATCCTGGTGCTCGACGAGGCGACC
AGCTCGGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGGCTGGCGCACGGACGCACCAGTTTCGTCAT
CGCGCACCGGCTGTCCACGATCCGTGACGCCGACGTGATTCTGGTGATGGAGAGCGGGGCCATCGTCGAGCAGGGCTCGC
ACGACGAACTGCTGGCCGCGGACGGCGCGTACGCGCGCCTGTACGCCGCACAGTTCGCGCAGGCCGTGGTGGAGGTCGAA
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(412-561)

ABC transporter transmembrane region (ABC_membrane)

(42-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.213

82.344

0.364