Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHS16_RS21830 Genome accession   NZ_CP107996
Coordinates   4858089..4859822 (-) Length   577 a.a.
NCBI ID   WP_328538920.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00344     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4853089..4864822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS16_RS21820 (OHS16_21820) - 4854856..4856100 (+) 1245 WP_328538918.1 sigma-70 family RNA polymerase sigma factor -
  OHS16_RS21825 (OHS16_21825) rcrQ 4856167..4858089 (-) 1923 WP_328538919.1 ABC transporter ATP-binding protein Regulator
  OHS16_RS21830 (OHS16_21830) rcrP 4858089..4859822 (-) 1734 WP_328538920.1 ABC transporter ATP-binding protein Regulator
  OHS16_RS21835 (OHS16_21835) - 4859948..4861393 (-) 1446 WP_328538921.1 FGGY family carbohydrate kinase -
  OHS16_RS21840 (OHS16_21840) - 4861455..4861754 (-) 300 WP_328538922.1 YtxH domain-containing protein -
  OHS16_RS21860 (OHS16_21860) - 4862734..4863141 (+) 408 WP_328538923.1 TOBE domain-containing protein -
  OHS16_RS21865 (OHS16_21865) - 4863294..4863815 (+) 522 WP_328538924.1 molybdopterin-dependent oxidoreductase -
  OHS16_RS21870 (OHS16_21870) - 4863919..4864338 (-) 420 WP_328538925.1 TOBE domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62498.85 Da        Isoelectric Point: 7.0987

>NTDB_id=650943 OHS16_RS21830 WP_328538920.1 4858089..4859822(-) (rcrP) [Streptomyces sp. NBC_00344]
MLIKILRTYLRPYKKPMALLVLLQLFQTCATLYLPTLNADIIDNGVVKGDSGYILGFGGLMIAISLVQVGCNIGAVYFGA
RTAAAVGRDIRAGVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLTLMAFTLMASAPIMCVGAIVLALGQDVPLSLV
LIAVVPVMLVLVSLIIRRMRPLFRKMQVRLDTVNRVLREQITGNRVIRAFVKDDYEKGRFEGANTELTEVSLGTARLMAL
MFPTVMTVVNISSIAVVWFGAHRIDSGAMQIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLTTDSSVVP
PLQPVRELARHGHLEIRGAGFKYPGAEASVLREVALQALPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGTDVR
KIDPVLLASTVSLVPQKPYLFSGTVATNLRYGNPDATDDDLWHALEVAQARDFVAQLDGGLNAPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALRQETSEATVVIVAQRVSTIRDADRIVVMDEGRVVGTGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=650943 OHS16_RS21830 WP_328538920.1 4858089..4859822(-) (rcrP) [Streptomyces sp. NBC_00344]
GTGCTCATAAAAATTCTGCGGACCTACCTGCGTCCGTACAAGAAACCGATGGCCCTGCTGGTGCTGCTACAGCTGTTCCA
GACCTGCGCCACTCTCTACCTGCCCACCCTCAACGCGGACATCATCGACAACGGTGTCGTCAAGGGAGACTCGGGTTACA
TCCTGGGCTTCGGCGGCCTCATGATCGCCATCAGTCTCGTTCAGGTCGGCTGCAACATCGGGGCCGTCTACTTCGGTGCC
CGGACCGCTGCCGCGGTCGGCAGGGACATCCGTGCCGGGGTCTTCGACCGGGTGCAGTCCTTCTCGGCCCGTGAGGTCGG
GCACTTCGGTGCGCCGTCCCTCATCACCCGTACCACCAACGACGTCCAGCAGGTCCAGATGCTGACGCTGATGGCGTTCA
CTCTGATGGCCTCCGCGCCGATCATGTGTGTCGGCGCCATCGTCCTGGCGCTCGGTCAGGACGTGCCGCTCTCTCTCGTG
CTGATCGCGGTCGTCCCGGTGATGCTCGTCCTGGTCTCGCTGATCATCCGGCGGATGCGTCCGCTGTTCCGGAAGATGCA
GGTGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTGAAGGACG
ACTACGAGAAGGGCCGCTTCGAGGGGGCCAACACCGAGCTGACCGAGGTCTCGCTGGGGACAGCGCGGCTGATGGCGCTG
ATGTTCCCCACTGTGATGACCGTGGTCAACATCTCGTCGATCGCGGTGGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
TGCGATGCAGATCGGCGCGCTCACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGTGCCGAGCGCATCCAGGAGGTGCTCACCACCGATTCCAGCGTGGTACCG
CCGCTGCAGCCGGTACGGGAACTGGCCAGGCACGGCCATCTTGAGATCCGCGGCGCCGGGTTCAAGTACCCGGGCGCCGA
GGCCTCCGTACTCAGGGAGGTCGCGCTGCAGGCACTGCCCGGTGAGACCACCGCGGTCATCGGGTCGACCGGCAGCGGCA
AGTCGACGCTGCTCGGCCTGGTGCCGCGGCTGTTCGACGCCACCGGCGGGGAAGTGCTGGTGGACGGCACCGATGTGCGG
AAGATCGACCCGGTGCTGCTGGCCAGCACCGTGTCGCTGGTCCCGCAGAAGCCGTATCTCTTCTCCGGCACCGTCGCGAC
GAACCTGCGCTACGGGAACCCCGACGCCACCGACGACGACCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAGGGACTTCG
TCGCGCAGCTCGATGGCGGGCTGAACGCCCCGATCTCGCAGGGCGGGACCAATGTCTCCGGCGGGCAGCGGCAGCGTCTG
GCGATCGCCAGAACACTGGTGCAGCGCCCGGAGATCTATCTCTTCGACGACTCCTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGTGCCGCGCTGCGCCAGGAGACGTCCGAAGCGACGGTGGTGATAGTCGCCCAGCGCGTCTCCACCATCC
GTGACGCCGACCGGATCGTCGTCATGGACGAGGGCCGGGTCGTCGGTACGGGGCGCCATCACGAGTTGATGGCCGGCAAT
GAGACATACCGGGAGATCGTGCTCTCCCAGCTCACCGAGGCGGAGGCGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.794

100

0.402