Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   L3V45_RS12030 Genome accession   NZ_CP091421
Coordinates   2479585..2479920 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus sp. R45     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2474585..2484920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V45_RS12010 (L3V45_12010) gcvT 2475195..2476295 (-) 1101 WP_095315606.1 glycine cleavage system aminomethyltransferase GcvT -
  L3V45_RS12015 (L3V45_12015) - 2476719..2478389 (+) 1671 WP_003153107.1 SNF2-related protein -
  L3V45_RS12020 (L3V45_12020) - 2478407..2479201 (+) 795 WP_014305407.1 YqhG family protein -
  L3V45_RS12025 (L3V45_12025) sinI 2479378..2479551 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  L3V45_RS12030 (L3V45_12030) sinR 2479585..2479920 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  L3V45_RS12035 (L3V45_12035) - 2479968..2480753 (-) 786 WP_236837015.1 TasA family protein -
  L3V45_RS12040 (L3V45_12040) - 2480817..2481401 (-) 585 WP_012117977.1 signal peptidase I -
  L3V45_RS12045 (L3V45_12045) tapA 2481373..2482044 (-) 672 WP_234949395.1 amyloid fiber anchoring/assembly protein TapA -
  L3V45_RS12050 (L3V45_12050) - 2482303..2482632 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  L3V45_RS12055 (L3V45_12055) - 2482672..2482851 (-) 180 WP_003153093.1 YqzE family protein -
  L3V45_RS12060 (L3V45_12060) comGG 2482908..2483285 (-) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  L3V45_RS12065 (L3V45_12065) comGF 2483286..2483681 (-) 396 WP_003153090.1 competence type IV pilus minor pilin ComGF -
  L3V45_RS12070 (L3V45_12070) comGE 2483695..2484009 (-) 315 WP_003153089.1 competence type IV pilus minor pilin ComGE -
  L3V45_RS12075 (L3V45_12075) comGD 2483993..2484430 (-) 438 WP_003153088.1 competence type IV pilus minor pilin ComGD Machinery gene
  L3V45_RS12080 (L3V45_12080) comGC 2484420..2484728 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=650943 L3V45_RS12030 WP_003153104.1 2479585..2479920(+) (sinR) [Bacillus sp. R45]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=650943 L3V45_RS12030 WP_003153104.1 2479585..2479920(+) (sinR) [Bacillus sp. R45]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991