Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   L2Z46_RS16715 Genome accession   NZ_CP091373
Coordinates   3464985..3465395 (+) Length   136 a.a.
NCBI ID   WP_002125991.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB21-VUB     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3459985..3470395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z46_RS16700 (L2Z46_16700) - 3460974..3463280 (+) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  L2Z46_RS16705 (L2Z46_16705) - 3463325..3464098 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  L2Z46_RS16710 (L2Z46_16710) mazG 3464210..3465016 (+) 807 WP_000359482.1 nucleoside triphosphate pyrophosphohydrolase -
  L2Z46_RS16715 (L2Z46_16715) comEA 3464985..3465395 (+) 411 WP_002125991.1 ComEA family DNA-binding protein Machinery gene
  L2Z46_RS16720 (L2Z46_16720) pcnB 3465520..3466983 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  L2Z46_RS16725 (L2Z46_16725) folK 3466980..3467462 (+) 483 WP_000219220.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  L2Z46_RS16730 (L2Z46_16730) panB 3467508..3468317 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  L2Z46_RS16735 (L2Z46_16735) panC 3468321..3469169 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  L2Z46_RS16740 (L2Z46_16740) rapZ 3469192..3470043 (+) 852 WP_000821671.1 RNase adapter RapZ -
  L2Z46_RS16745 (L2Z46_16745) - 3470040..3470309 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15672.97 Da        Isoelectric Point: 10.4475

>NTDB_id=650801 L2Z46_RS16715 WP_002125991.1 3464985..3465395(+) (comEA) [Acinetobacter baumannii strain AB21-VUB]
MQYSMRFWKNKYFVLIMLCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=650801 L2Z46_RS16715 WP_002125991.1 3464985..3465395(+) (comEA) [Acinetobacter baumannii strain AB21-VUB]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

97.059

100

0.971
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404