Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT01_RS19170 Genome accession   NZ_CP107976
Coordinates   4554270..4554950 (-) Length   226 a.a.
NCBI ID   WP_328554360.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00358     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4549270..4559950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT01_RS19155 (OHT01_19140) - 4550788..4552008 (-) 1221 WP_328554357.1 cytochrome P450 -
  OHT01_RS19160 (OHT01_19145) vraR 4552088..4552771 (-) 684 WP_328554358.1 response regulator transcription factor Regulator
  OHT01_RS19165 (OHT01_19150) - 4552768..4554129 (-) 1362 WP_328554359.1 histidine kinase -
  OHT01_RS19170 (OHT01_19155) vraR 4554270..4554950 (-) 681 WP_328554360.1 response regulator transcription factor Regulator
  OHT01_RS19175 (OHT01_19160) - 4554947..4556311 (-) 1365 WP_328558173.1 sensor histidine kinase -
  OHT01_RS19180 (OHT01_19165) - 4556562..4557785 (-) 1224 WP_328554361.1 acyltransferase -
  OHT01_RS19185 (OHT01_19170) - 4557778..4558920 (-) 1143 WP_328554362.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24325.04 Da        Isoelectric Point: 5.1072

>NTDB_id=650592 OHT01_RS19170 WP_328554360.1 4554270..4554950(-) (vraR) [Streptomyces sp. NBC_00358]
MTTVSGTIRVLIADDQQMVRQGFTVLLNTHAGIEVVGQAVDGLDAILKAAELAPDVVLMDIRMPELGGIEATRRITTDTP
HIKVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDSTPRAPLKQRVGD
LTERETEVLAHIAQGLSNAEIAQCLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLIRPTGY

Nucleotide


Download         Length: 681 bp        

>NTDB_id=650592 OHT01_RS19170 WP_328554360.1 4554270..4554950(-) (vraR) [Streptomyces sp. NBC_00358]
ATGACGACCGTGAGCGGCACCATCCGCGTACTGATCGCCGACGACCAGCAGATGGTGCGGCAGGGATTCACCGTGCTGCT
CAACACCCACGCGGGCATCGAGGTGGTCGGTCAGGCGGTCGACGGACTCGACGCGATCCTCAAGGCCGCCGAACTGGCGC
CGGACGTCGTCCTGATGGACATCCGCATGCCCGAACTCGGCGGCATCGAGGCGACCCGCCGCATCACCACCGACACTCCG
CACATCAAGGTCCTGGTGCTCACCACGTTCGACCTCGACGAGTACGTCTACGAAGCGCTCCGGGCCGGGGCGTCCGGTTT
TCTCCTCAAGGACGCCTCGGCCGATCAACTCGCTGAAGCGGTCCGCGTGGTGGCGGCCGGCGACGCCCTCCTCGCCCCCG
GCATCACCCGTCGGCTCATCGCCGAGTTCTCCCGTCTCGACTCCACCCCGCGCGCGCCTCTCAAGCAACGCGTCGGCGAC
CTCACCGAGCGGGAGACCGAGGTTCTGGCGCACATCGCCCAGGGACTCTCCAACGCCGAGATCGCCCAGTGTCTGGTGGT
GGCCGAGCAGACCGTGAAGACCCACGTGGGCCGCATCCTCGTCAAGCTGGGCCTGCGCGACCGCACCCAGGCCGCGGTCT
TCGCCTACGAATCGGGCCTGATCCGCCCCACGGGCTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(161-215)

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.833

95.575

0.438
  degU Bacillus subtilis subsp. subtilis str. 168

40.359

98.673

0.398