Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT01_RS19160 Genome accession   NZ_CP107976
Coordinates   4552088..4552771 (-) Length   227 a.a.
NCBI ID   WP_328554358.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00358     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4547088..4557771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT01_RS19140 (OHT01_19125) - 4547485..4547982 (-) 498 WP_328554354.1 helix-turn-helix domain-containing protein -
  OHT01_RS19145 (OHT01_19130) - 4548086..4549078 (+) 993 WP_328554355.1 ABC transporter ATP-binding protein -
  OHT01_RS19150 (OHT01_19135) - 4549075..4550697 (+) 1623 WP_328554356.1 ABC transporter permease -
  OHT01_RS19155 (OHT01_19140) - 4550788..4552008 (-) 1221 WP_328554357.1 cytochrome P450 -
  OHT01_RS19160 (OHT01_19145) vraR 4552088..4552771 (-) 684 WP_328554358.1 response regulator transcription factor Regulator
  OHT01_RS19165 (OHT01_19150) - 4552768..4554129 (-) 1362 WP_328554359.1 histidine kinase -
  OHT01_RS19170 (OHT01_19155) vraR 4554270..4554950 (-) 681 WP_328554360.1 response regulator transcription factor Regulator
  OHT01_RS19175 (OHT01_19160) - 4554947..4556311 (-) 1365 WP_328558173.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24462.19 Da        Isoelectric Point: 4.9790

>NTDB_id=650591 OHT01_RS19160 WP_328554358.1 4552088..4552771(-) (vraR) [Streptomyces sp. NBC_00358]
MTGGTSPAIRVLIADDQMMVREGFSVLLGAMPDIEVVGEAVNGREAVERVRELRPDVVLMDIRMPEMNGIDATREIVAAD
GAAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVSAGEALLAPSVTRRLITEFSKLADQPRMSATAHAA
YGDLTDRETEVLVLIAQGLSNSEIAGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPR

Nucleotide


Download         Length: 684 bp        

>NTDB_id=650591 OHT01_RS19160 WP_328554358.1 4552088..4552771(-) (vraR) [Streptomyces sp. NBC_00358]
ATGACGGGCGGTACGAGCCCGGCGATCCGCGTGCTGATCGCCGACGACCAGATGATGGTCCGCGAGGGCTTCTCCGTGCT
GCTCGGCGCGATGCCGGACATCGAGGTGGTCGGCGAGGCGGTCAACGGCCGGGAGGCGGTCGAACGGGTCCGTGAGCTGC
GGCCGGACGTCGTGCTGATGGACATCCGCATGCCGGAGATGAACGGGATCGACGCGACCCGGGAGATCGTCGCCGCGGAC
GGCGCCGCGAAGGTGCTGGTGCTGACGACGTTCGACCTGGACGAGTACGTGTACCAGGCGCTGCGGGCGGGGGCCTCCGG
TTTCCTGCTCAAGGACGCCTCGGCCCGCCAGCTCGCCGACGGGGTGAGAGTGGTGTCGGCCGGGGAGGCGTTGCTCGCTC
CCTCGGTCACCAGACGTCTGATCACGGAGTTCTCCAAGCTCGCGGACCAGCCCCGGATGTCGGCGACGGCGCACGCGGCG
TACGGGGATCTCACCGATCGGGAGACGGAGGTGCTGGTGCTGATCGCGCAGGGGCTGTCCAACTCGGAGATCGCCGGGCG
GCTCGTGGTCGCGGAGTCGACGATCAAGACCCATGTGAGCCGCATTCTGGTGAAGCTGGGCCTGCGGGACCGCACGCAGG
CGGCGGTGTTCGCGTACGAGGCACGCCTGGTCACCCCGAGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(11-120)

Bacterial regulatory proteins, luxR family (GerE)

(164-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.981

95.154

0.418
  degU Bacillus subtilis subsp. subtilis str. 168

40.708

99.559

0.405