Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   L2Z07_RS12245 Genome accession   NZ_CP091367
Coordinates   2541636..2542454 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AB169-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2536636..2547454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z07_RS12230 (L2Z07_12230) pilE 2536855..2537280 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  L2Z07_RS12235 (L2Z07_12235) pilY2 2537277..2537759 (-) 483 WP_001046489.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  L2Z07_RS12240 (L2Z07_12240) pilY1 2537770..2541624 (-) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  L2Z07_RS12245 (L2Z07_12245) pilX 2541636..2542454 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2Z07_RS12250 (L2Z07_12250) pilW 2542451..2543452 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  L2Z07_RS12255 (L2Z07_12255) pilV 2543453..2544013 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  L2Z07_RS12260 (L2Z07_12260) fimU 2544007..2544480 (-) 474 WP_001214060.1 GspH/FimT family pseudopilin Machinery gene
  L2Z07_RS12265 (L2Z07_12265) ispH 2544650..2545600 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z07_RS12270 (L2Z07_12270) gmk 2545723..2546352 (+) 630 WP_000015937.1 guanylate kinase -
  L2Z07_RS12275 (L2Z07_12275) rpoZ 2546425..2546703 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z07_RS12280 (L2Z07_12280) - 2546742..2546872 (+) 131 Protein_2412 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=650587 L2Z07_RS12245 WP_000149374.1 2541636..2542454(-) (pilX) [Acinetobacter baumannii strain AB169-VUB]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=650587 L2Z07_RS12245 WP_000149374.1 2541636..2542454(-) (pilX) [Acinetobacter baumannii strain AB169-VUB]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993