Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OHT01_RS18195 Genome accession   NZ_CP107976
Coordinates   4323873..4325282 (+) Length   469 a.a.
NCBI ID   WP_328554194.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00358     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4318873..4330282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT01_RS18180 (OHT01_18165) - 4319624..4320556 (-) 933 WP_328554191.1 Ppx/GppA phosphatase family protein -
  OHT01_RS18185 (OHT01_18170) - 4320682..4321521 (+) 840 WP_328554192.1 hypothetical protein -
  OHT01_RS18190 (OHT01_18175) - 4321665..4323461 (-) 1797 WP_328554193.1 hypothetical protein -
  OHT01_RS18195 (OHT01_18180) radA 4323873..4325282 (+) 1410 WP_328554194.1 DNA repair protein RadA Machinery gene
  OHT01_RS18200 (OHT01_18185) disA 4325351..4326475 (+) 1125 WP_261704645.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHT01_RS18205 (OHT01_18190) - 4326650..4327489 (-) 840 WP_328554195.1 hypothetical protein -
  OHT01_RS18210 (OHT01_18195) - 4327681..4328598 (+) 918 WP_328554196.1 A/G-specific adenine glycosylase -
  OHT01_RS18215 (OHT01_18200) - 4328851..4329390 (+) 540 WP_328554197.1 SigE family RNA polymerase sigma factor -
  OHT01_RS18220 (OHT01_18205) - 4329378..4330028 (+) 651 WP_328554198.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49741.90 Da        Isoelectric Point: 8.2591

>NTDB_id=650585 OHT01_RS18195 WP_328554194.1 4323873..4325282(+) (radA) [Streptomyces sp. NBC_00358]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGTPAVRTTAPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIHDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTIASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLTDPSGLFLTRRTEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGKISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPTDPGKIPDGMKVLEVADIGAALSVLPRSRRREAPRDEEQRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=650585 OHT01_RS18195 WP_328554194.1 4323873..4325282(+) (radA) [Streptomyces sp. NBC_00358]
ATGGCTGCCCGTACGAAAACCGCGAAGGACCGTCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCATGGGGGACGGTCGAGGAGTACGGCACGCCCGCCGTCCGCACGACGGCACCGGGCC
GGGTCACCACGTCCGCGGTGCCCATCGGCCAGGTCGACGGCCGTCAGGCCACCGCCCGCAGCACCGGCGTGCCCGAGCTG
GACCGTGTCCTCGGCGGGGGTCTCGTGCCCGGGGCGGTCGTCCTGGTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACCCT
CCTGCTGGACGTGGCGGCCAAGTCGGCGAGTGACGAACACCGCACCCTGTACGTGACGGGTGAGGAGTCGGCCAGCCAGG
TGCGGCTGCGCGCGGACCGCATCAAGGCGATCCACGACCACCTCTATCTCGCGGCGGAGACCGATCTGGCGGCCGTCCTC
GGCCACTTGGACGCCGTGAAGCCGTCGCTGCTCATCCTGGACTCCGTCCAGACCATCGCCTCCCCGGAGATCGACGGCGC
GCCCGGCGGCATGGCGCAGGTCCGGGAGGTCGCGGGCGCGCTCATCCGCGCCTCCAAGGAGCGCGGCATGTCCACCCTGC
TCGTGGGCCATGTCACCAAGGACGGCGCCATCGCCGGTCCCCGGCTGCTCGAACACCTCGTGGACGTCGTCCTGTCCTTC
GAGGGCGACCGGCACGCGCGCCTGAGGCTCGTCCGAGGCGTCAAGAACCGCTACGGGACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCACCGACCCCTCCGGCCTCTTCCTGACGCGCCGCACCGAGCCCGTTCCCG
GCACCTGCCTGACCGTCACGCTGGAGGGCCGCCGCCCGCTGGTCGCCGAAGTGCAGGCGCTCACGGTGGACTCGCAGATC
CCCTCCCCGCGCCGTACGACCTCGGGTCTGGAGACCTCCCGCGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGGCAA
GATCAGCGCCCTCGGAAAGAGGGACATCTACTCGGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCCGCCGCCGACCTCG
CCATCGCGCTCGCCCTGGCGTCCGCGGCGAGTGACACCCCGCTGCCCAAGAACCTCGTGGCGATCGGCGAAGTGGGGCTC
GCGGGCGAGGTCAGACGGGTCACGGGGGTCCAGCGCAGGCTGTCCGAGGCACACCGTCTGGGCTTCACCCACGCTCTCGT
ACCGACCGATCCGGGCAAGATCCCGGACGGCATGAAGGTCCTGGAAGTGGCGGACATCGGCGCGGCGCTGAGTGTCCTTC
CGCGCTCGCGTCGCAGAGAGGCCCCACGGGACGAGGAACAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae TIGR4

43.207

95.736

0.414
  radA Streptococcus pneumoniae D39

43.207

95.736

0.414
  radA Streptococcus pneumoniae R6

43.207

95.736

0.414
  radA Streptococcus pneumoniae Rx1

43.207

95.736

0.414
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

96.375

0.414
  radA Streptococcus mitis SK321

44.366

90.832

0.403
  radA Streptococcus mitis NCTC 12261

44.366

90.832

0.403