Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   L2Z08_RS16545 Genome accession   NZ_CP091366
Coordinates   3441226..3441966 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain AB171-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3436226..3446966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z08_RS16525 (L2Z08_16520) aroB 3436763..3437845 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  L2Z08_RS16530 (L2Z08_16525) aroK 3437874..3438443 (-) 570 WP_000643712.1 shikimate kinase AroK -
  L2Z08_RS16535 (L2Z08_16530) pilQ 3438455..3440620 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  L2Z08_RS16540 (L2Z08_16535) pilP 3440688..3441215 (-) 528 WP_215745106.1 pilus assembly protein PilP Machinery gene
  L2Z08_RS16545 (L2Z08_16540) pilO 3441226..3441966 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  L2Z08_RS16550 (L2Z08_16545) pilN 3441963..3442604 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  L2Z08_RS16555 (L2Z08_16550) pilM 3442604..3443662 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  L2Z08_RS16560 (L2Z08_16555) ponA 3443825..3446380 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=650562 L2Z08_RS16545 WP_000076101.1 3441226..3441966(-) (pilO) [Acinetobacter baumannii strain AB171-VUB]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=650562 L2Z08_RS16545 WP_000076101.1 3441226..3441966(-) (pilO) [Acinetobacter baumannii strain AB171-VUB]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683