Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   L2Z08_RS16540 Genome accession   NZ_CP091366
Coordinates   3440688..3441215 (-) Length   175 a.a.
NCBI ID   WP_215745106.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB171-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3435688..3446215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z08_RS16520 (L2Z08_16515) - 3435872..3436747 (-) 876 WP_101458552.1 hypothetical protein -
  L2Z08_RS16525 (L2Z08_16520) aroB 3436763..3437845 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  L2Z08_RS16530 (L2Z08_16525) aroK 3437874..3438443 (-) 570 WP_000643712.1 shikimate kinase AroK -
  L2Z08_RS16535 (L2Z08_16530) pilQ 3438455..3440620 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  L2Z08_RS16540 (L2Z08_16535) pilP 3440688..3441215 (-) 528 WP_215745106.1 pilus assembly protein PilP Machinery gene
  L2Z08_RS16545 (L2Z08_16540) pilO 3441226..3441966 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  L2Z08_RS16550 (L2Z08_16545) pilN 3441963..3442604 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  L2Z08_RS16555 (L2Z08_16550) pilM 3442604..3443662 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19459.66 Da        Isoelectric Point: 8.9914

>NTDB_id=650561 L2Z08_RS16540 WP_215745106.1 3440688..3441215(-) (pilP) [Acinetobacter baumannii strain AB171-VUB]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAH

Nucleotide


Download         Length: 528 bp        

>NTDB_id=650561 L2Z08_RS16540 WP_215745106.1 3440688..3441215(-) (pilP) [Acinetobacter baumannii strain AB171-VUB]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACACTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

99.429

0.994
  comL Acinetobacter baylyi ADP1

72.093

98.286

0.709