Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   MMOS7_RS00375 Genome accession   NZ_AP011528
Coordinates   68778..69674 (-) Length   298 a.a.
NCBI ID   WP_119720490.1    Uniprot ID   A0A2Z5PFW9
Organism   Methanococcus maripaludis OS7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 63778..74674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMOS7_RS00350 (MMOS7_00590) - 64323..65549 (+) 1227 WP_011169977.1 AAA family ATPase -
  MMOS7_RS00355 (MMOS7_00600) mptA 65570..66517 (+) 948 WP_119720487.1 GTP cyclohydrolase MptA -
  MMOS7_RS00360 (MMOS7_00610) - 66543..67592 (+) 1050 WP_119720488.1 ATP-grasp domain-containing protein -
  MMOS7_RS00365 (MMOS7_00620) tfe 67596..68153 (+) 558 WP_011169980.1 transcription factor E -
  MMOS7_RS00370 (MMOS7_00630) - 68164..68751 (+) 588 WP_119720489.1 HDIG domain-containing metalloprotein -
  MMOS7_RS00375 (MMOS7_00640) epdJ 68778..69674 (-) 897 WP_119720490.1 type II secretion system F family protein Machinery gene
  MMOS7_RS00380 (MMOS7_00650) epdK 69679..70737 (-) 1059 WP_119720491.1 type II secretion system F family protein Machinery gene
  MMOS7_RS00385 (MMOS7_00660) epdL 70749..72398 (-) 1650 WP_119720492.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  MMOS7_RS00390 (MMOS7_00670) - 72408..73427 (-) 1020 WP_119720493.1 transcription initiation factor IIB -
  MMOS7_RS00395 (MMOS7_00680) - 73446..73727 (-) 282 WP_011169986.1 Gar1/Naf1 family protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 32710.37 Da        Isoelectric Point: 9.9420

>NTDB_id=65050 MMOS7_RS00375 WP_119720490.1 68778..69674(-) (epdJ) [Methanococcus maripaludis OS7]
MDAKKYLDHVYHVLIVRNIKILKKTGKKLDERVFIGILLVITILPVLLKIFLGFTLKTTLILTFVYLGSVLSLPAIMYES
KMDKFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKVVVLMTERKLSFEDAMILVSNSLDSKIFRQVGR
LIIENRKYGGELADTLKKLAKTLEDLQNLKSQLLSVTANGLAVGLIILCGVIPATAGLIGGYLTVISQLAPTMPSVEASQ
ISKAIETIQFGSGLFGLFFAVPLFGLKVNRMIITCAVCMTFAIGTFYAVLRLTGLLFA

Nucleotide


Download         Length: 897 bp        

>NTDB_id=65050 MMOS7_RS00375 WP_119720490.1 68778..69674(-) (epdJ) [Methanococcus maripaludis OS7]
ATGGATGCCAAAAAATACCTAGATCATGTATATCATGTTTTAATTGTACGAAATATTAAGATATTAAAAAAGACAGGTAA
AAAACTTGATGAAAGGGTATTTATCGGTATTTTATTGGTTATAACGATTTTACCAGTATTGTTAAAAATATTCTTAGGTT
TTACATTAAAAACCACTTTAATCCTAACCTTCGTGTATTTAGGATCCGTTCTTTCACTACCTGCTATAATGTATGAATCA
AAGATGGATAAATTCGACAAAAATATACCAAAAGCCCTTTATGTTATGGTTTTATCACTTGATTCCGGACGTTCTGTTGT
TGAAGCTATTAATGAAGTTATAAGAAGTGGAATTCCTGAAGTAGATGTTGTATTTTCAAAAGTTGTCGTATTAATGACTG
AAAGAAAATTGAGTTTTGAGGATGCAATGATTCTTGTTTCAAATTCACTTGACTCAAAGATCTTTAGGCAAGTTGGAAGA
TTGATTATTGAAAATAGAAAATACGGGGGGGAACTTGCAGATACATTAAAAAAACTCGCAAAAACCCTTGAAGATCTTCA
GAATTTAAAATCTCAACTTCTAAGTGTCACTGCAAACGGTCTTGCAGTTGGTCTTATTATTCTTTGTGGTGTAATCCCCG
CAACTGCTGGTTTAATTGGGGGTTATTTAACAGTAATATCTCAGTTAGCACCAACAATGCCTTCTGTTGAAGCTTCACAG
ATATCAAAAGCAATTGAAACTATTCAGTTTGGATCTGGATTGTTTGGTCTTTTCTTTGCTGTTCCATTATTTGGTTTAAA
AGTAAATAGAATGATAATTACGTGTGCGGTATGTATGACTTTTGCAATCGGCACATTTTATGCAGTATTGAGACTTACCG
GACTGTTATTTGCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(94-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z5PFW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanococcus maripaludis strain DSM 2067

97.651

100

0.977

Multiple sequence alignment