Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   MMOS7_RS00385 Genome accession   NZ_AP011528
Coordinates   70749..72398 (-) Length   549 a.a.
NCBI ID   WP_119720492.1    Uniprot ID   A0A2Z5PEV6
Organism   Methanococcus maripaludis OS7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 65749..77398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMOS7_RS00360 (MMOS7_00610) - 66543..67592 (+) 1050 WP_119720488.1 ATP-grasp domain-containing protein -
  MMOS7_RS00365 (MMOS7_00620) tfe 67596..68153 (+) 558 WP_011169980.1 transcription factor E -
  MMOS7_RS00370 (MMOS7_00630) - 68164..68751 (+) 588 WP_119720489.1 HDIG domain-containing metalloprotein -
  MMOS7_RS00375 (MMOS7_00640) epdJ 68778..69674 (-) 897 WP_119720490.1 type II secretion system F family protein Machinery gene
  MMOS7_RS00380 (MMOS7_00650) epdK 69679..70737 (-) 1059 WP_119720491.1 type II secretion system F family protein Machinery gene
  MMOS7_RS00385 (MMOS7_00660) epdL 70749..72398 (-) 1650 WP_119720492.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  MMOS7_RS00390 (MMOS7_00670) - 72408..73427 (-) 1020 WP_119720493.1 transcription initiation factor IIB -
  MMOS7_RS00395 (MMOS7_00680) - 73446..73727 (-) 282 WP_011169986.1 Gar1/Naf1 family protein -
  MMOS7_RS00400 (MMOS7_00690) fni 74231..75298 (+) 1068 WP_011169987.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  MMOS7_RS00405 (MMOS7_00700) - 75371..76717 (+) 1347 WP_119720494.1 RNase J family beta-CASP ribonuclease -

Sequence

Protein


Download         Length: 549 a.a.        Molecular weight: 61775.92 Da        Isoelectric Point: 5.7523

>NTDB_id=65052 MMOS7_RS00385 WP_119720492.1 70749..72398(-) (epdL) [Methanococcus maripaludis OS7]
MGLFDRIQSRDSNPSVAKKNNVSEKVSETPNILDTSEKVKKPEIKVGFSVNERAKQPVEEFERDSTSSILDKYFVKVDDI
DFDVIIEKENGVTLYKIPEITLMNTALAKFSDLDIKTIKAELSESTLQKLGQIQGYLKNYSEKNNLHLRDIEILHLSHYF
YLIIGKLGLLEIPLNDSKLEEVMVNGVESPSFVFHRKYQMCETNIRLDRHEATRVVESIAYLAGRTIDSRTPMLDAFLPD
GSRVNATMSDVTLGGNTITIRKFSEDPLTIVDLINFGTFDLELAAFLWQAVEGYFGAKPANTLIVGGTGSGKTTTLNVVS
MFSMYTDRLVTIEDTPELQVPLTHLIKMITRPGRPGIQGYEITMDDLIKNSLRMRPDRIFVGEVRGSEAHSLLVAMNTGH
DGCSGTLHANSADEALIRLINPPMNVPKVMMSSVDFIINQQRIKRNKKTVRRILGVVEIGGSGENITKTELFKYDGISDS
VVKTGICMWEEDVCQIAGITRDELMDDRINRKKVLKYMVNNNINDIRKVGDVLKQYQENPENVLKNILE

Nucleotide


Download         Length: 1650 bp        

>NTDB_id=65052 MMOS7_RS00385 WP_119720492.1 70749..72398(-) (epdL) [Methanococcus maripaludis OS7]
ATGGGGCTTTTTGACAGAATCCAAAGCAGAGATTCCAATCCATCTGTCGCTAAAAAAAATAATGTATCTGAAAAAGTATC
TGAAACCCCCAATATACTTGATACTTCTGAAAAAGTCAAAAAACCCGAAATAAAAGTGGGTTTTTCAGTGAATGAACGGG
CAAAACAGCCAGTAGAAGAATTTGAAAGAGATTCTACAAGCTCAATACTCGATAAATACTTTGTAAAAGTTGATGACATT
GATTTTGATGTAATTATTGAGAAAGAAAATGGTGTCACACTATACAAGATTCCAGAAATCACTCTTATGAATACAGCTCT
TGCAAAATTTTCAGATTTGGATATTAAAACAATAAAAGCGGAACTTTCAGAATCTACCCTTCAAAAATTAGGACAGATCC
AAGGATACCTTAAAAATTATTCGGAAAAAAATAATTTACATTTAAGAGATATTGAAATACTCCATTTATCACACTATTTT
TACTTAATAATTGGAAAATTAGGGCTTTTAGAAATTCCATTAAATGATAGCAAATTAGAAGAAGTAATGGTAAATGGTGT
TGAATCACCTTCTTTCGTATTTCACAGAAAATACCAGATGTGTGAAACAAATATTAGGCTTGATAGACACGAAGCAACGA
GGGTTGTTGAAAGTATAGCTTATCTTGCAGGCAGGACTATTGATTCAAGAACTCCAATGCTTGATGCATTTTTACCAGAT
GGAAGCAGGGTTAACGCTACAATGAGTGACGTTACATTGGGTGGAAACACAATTACCATTCGTAAGTTTAGTGAAGATCC
ATTAACTATTGTTGATTTAATTAATTTTGGAACTTTTGATTTAGAACTTGCGGCATTCCTCTGGCAGGCTGTTGAAGGAT
ACTTTGGTGCAAAACCTGCAAACACTTTGATTGTAGGTGGAACTGGTTCGGGTAAAACTACAACTTTAAACGTTGTTTCA
ATGTTTTCGATGTATACCGATAGACTTGTAACTATTGAAGATACTCCAGAGTTACAGGTTCCACTAACTCACCTGATAAA
AATGATTACAAGACCTGGAAGACCTGGTATTCAGGGTTATGAAATCACGATGGATGATTTGATCAAGAACTCCTTAAGGA
TGAGGCCTGACAGGATATTTGTAGGGGAAGTTAGGGGTAGTGAAGCCCATTCGTTGCTTGTTGCTATGAACACCGGGCAT
GACGGATGTTCCGGAACTCTGCACGCAAACAGCGCAGATGAAGCACTCATTAGGTTAATAAACCCACCTATGAACGTTCC
AAAAGTTATGATGTCTTCAGTTGATTTTATCATAAACCAGCAGCGTATTAAACGTAATAAAAAAACTGTTAGAAGGATCC
TCGGTGTTGTTGAAATCGGGGGAAGTGGGGAAAATATTACAAAAACTGAGCTCTTTAAATACGATGGAATAAGCGACAGT
GTTGTAAAAACAGGAATTTGTATGTGGGAAGAAGACGTGTGCCAGATTGCAGGTATCACAAGAGATGAATTAATGGACGA
TAGAATCAATAGAAAGAAAGTACTAAAATATATGGTGAACAACAATATTAATGATATTAGAAAAGTAGGGGATGTACTTA
AGCAATATCAGGAAAATCCAGAAAATGTCTTGAAAAACATTCTGGAATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(176-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z5PEV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanococcus maripaludis strain DSM 2067

99.454

100

0.995

Multiple sequence alignment