Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   MMKA1_RS00235 Genome accession   NZ_AP011526
Coordinates   50863..51921 (-) Length   352 a.a.
NCBI ID   WP_146777878.1    Uniprot ID   A0A2Z5PFK6
Organism   Methanococcus maripaludis KA1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 45863..56921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMKA1_RS00210 (MMKA1_00360) mptA 46754..47701 (+) 948 WP_146777875.1 GTP cyclohydrolase MptA -
  MMKA1_RS00215 (MMKA1_00370) - 47727..48776 (+) 1050 WP_146777876.1 ATP-grasp domain-containing protein -
  MMKA1_RS00220 (MMKA1_00380) tfe 48780..49337 (+) 558 WP_011169980.1 transcription factor E -
  MMKA1_RS00225 (MMKA1_00390) - 49348..49935 (+) 588 WP_119720489.1 HDIG domain-containing metalloprotein -
  MMKA1_RS00230 (MMKA1_00400) epdJ 49962..50858 (-) 897 WP_146777877.1 type II secretion system F family protein Machinery gene
  MMKA1_RS00235 (MMKA1_00410) epdK 50863..51921 (-) 1059 WP_146777878.1 type II secretion system F family protein Machinery gene
  MMKA1_RS00240 (MMKA1_00420) epdL 51933..53582 (-) 1650 WP_146777879.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  MMKA1_RS00245 (MMKA1_00430) - 53592..54611 (-) 1020 WP_119720493.1 transcription initiation factor IIB -
  MMKA1_RS00250 (MMKA1_00440) - 54630..54911 (-) 282 WP_011169986.1 Gar1/Naf1 family protein -
  MMKA1_RS00255 (MMKA1_00450) fni 55415..56482 (+) 1068 WP_011169987.1 type 2 isopentenyl-diphosphate Delta-isomerase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39689.62 Da        Isoelectric Point: 9.8223

>NTDB_id=65036 MMKA1_RS00235 WP_146777878.1 50863..51921(-) (epdK) [Methanococcus maripaludis KA1]
MKRKTEKKQGTFDKLANTLKGVKTPKKRKISRVGRSEYLKKIFERKTEDIHKDEILEFYEPYIDETPEVSIDLDDLLFEK
KEFGALGGYSRSFSYWVTNTSFLPSKRDYQYAGIVDERVYFLKMMIAAITTVVLFIIYGVLTGDVFSGVSNGVLLAVIIV
VGSIFYPKLKLTLFRGEIKIQVLMSILHLISMLNSGASVQESLKNIANNPEYGITSFEFRSIIKDINQGGYNFVEALDRA
KLRSKIPLMKKLYEQLILAANKGGTQLLLENLYNEIVRESMSKIDSSKFQISNLGNLIFGIGLIIPFSGMIQSALGAQQG
FDGIINAIDLVMGKIGLMSTIIFTIFIKMKIE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=65036 MMKA1_RS00235 WP_146777878.1 50863..51921(-) (epdK) [Methanococcus maripaludis KA1]
ATGAAAAGAAAAACTGAAAAAAAACAGGGTACTTTTGATAAACTCGCCAATACATTAAAAGGAGTTAAAACTCCGAAAAA
AAGAAAAATATCTAGGGTTGGAAGATCGGAATATTTAAAAAAAATCTTCGAAAGAAAAACTGAAGATATACATAAAGATG
AGATTTTAGAGTTTTACGAACCATATATCGATGAAACTCCCGAAGTAAGTATTGACTTAGATGATTTACTTTTTGAAAAA
AAAGAATTTGGAGCACTTGGCGGATACTCCAGATCTTTTTCATACTGGGTTACAAACACCTCATTTTTACCATCTAAGAG
GGATTACCAGTATGCAGGTATTGTAGATGAGCGAGTTTATTTCTTAAAGATGATGATTGCAGCAATCACCACGGTTGTTT
TGTTCATAATTTACGGTGTTTTGACCGGCGATGTATTTTCTGGCGTTTCTAATGGGGTACTTTTAGCAGTTATTATAGTT
GTTGGTAGTATATTTTATCCAAAACTAAAATTAACATTGTTTAGGGGGGAAATTAAAATTCAGGTGTTAATGAGTATATT
ACACCTTATTTCAATGTTAAACTCTGGTGCTTCTGTTCAGGAATCCCTGAAAAATATTGCAAACAATCCAGAATATGGAA
TTACCTCTTTTGAATTTAGGAGTATTATAAAAGATATTAATCAGGGTGGGTATAACTTCGTAGAAGCTCTTGATAGGGCC
AAACTTCGATCTAAAATACCTTTAATGAAAAAACTTTATGAACAGTTAATCCTTGCTGCAAATAAAGGTGGAACTCAGTT
ACTACTTGAAAATTTGTATAATGAAATTGTAAGAGAATCCATGTCAAAAATAGACAGTTCAAAATTCCAAATATCAAATT
TGGGAAATCTTATATTTGGTATTGGTTTGATTATCCCATTTTCAGGAATGATACAGTCAGCATTGGGTGCTCAACAAGGA
TTTGACGGAATTATCAATGCTATTGACCTCGTGATGGGCAAAATAGGGTTAATGTCAACAATTATATTTACCATCTTTAT
TAAAATGAAGATTGAGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(187-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z5PFK6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanococcus maripaludis strain DSM 2067

97.727

100

0.977

Multiple sequence alignment