Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   MMKA1_RS00240 Genome accession   NZ_AP011526
Coordinates   51933..53582 (-) Length   549 a.a.
NCBI ID   WP_146777879.1    Uniprot ID   A0A2Z5PCI3
Organism   Methanococcus maripaludis KA1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 46933..58582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMKA1_RS00215 (MMKA1_00370) - 47727..48776 (+) 1050 WP_146777876.1 ATP-grasp domain-containing protein -
  MMKA1_RS00220 (MMKA1_00380) tfe 48780..49337 (+) 558 WP_011169980.1 transcription factor E -
  MMKA1_RS00225 (MMKA1_00390) - 49348..49935 (+) 588 WP_119720489.1 HDIG domain-containing metalloprotein -
  MMKA1_RS00230 (MMKA1_00400) epdJ 49962..50858 (-) 897 WP_146777877.1 type II secretion system F family protein Machinery gene
  MMKA1_RS00235 (MMKA1_00410) epdK 50863..51921 (-) 1059 WP_146777878.1 type II secretion system F family protein Machinery gene
  MMKA1_RS00240 (MMKA1_00420) epdL 51933..53582 (-) 1650 WP_146777879.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  MMKA1_RS00245 (MMKA1_00430) - 53592..54611 (-) 1020 WP_119720493.1 transcription initiation factor IIB -
  MMKA1_RS00250 (MMKA1_00440) - 54630..54911 (-) 282 WP_011169986.1 Gar1/Naf1 family protein -
  MMKA1_RS00255 (MMKA1_00450) fni 55415..56482 (+) 1068 WP_011169987.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  MMKA1_RS00260 (MMKA1_00460) - 56555..57901 (+) 1347 WP_146777880.1 RNase J family beta-CASP ribonuclease -

Sequence

Protein


Download         Length: 549 a.a.        Molecular weight: 61778.95 Da        Isoelectric Point: 5.9253

>NTDB_id=65037 MMKA1_RS00240 WP_146777879.1 51933..53582(-) (epdL) [Methanococcus maripaludis KA1]
MGLFDRIQSRDSNPSVAKKNNVSEKVSETPNILDTSEKVKKPEIKVGFSVNERAKQPVEEFERDSTSSILDKYFVKVDDI
DFDVIIEKENGVTLYKIPEITLMNTALAKFSDMDIKTIKAELSESTLQKLGQIQGYLKNYSEKNNLHLRDIEILHLSHYF
YLIIGKLGLLEIPLNDSKLEEVMVNGVESPSFVFHRKYQMCETNIRLDRHEATRVVESIAYLAGRTIDSRTPMLDAFLPD
GSRVNATMSDVTLGGNTITIRKFSEDPLTIVDLINFGTFDLELAAFLWQAVEGYFGSKPANTLIVGGTGSGKTTTLNVVS
MFSMYNDRIITVEDTPELQIPLTHLIKMITRPGRPGIQGYEITMDDLIKNSLRMRPDRIFVGEVRGSEAHSLLVAMNTGH
DGCSGTLHANSADEALIRLINPPMNVPKVMMSSVDFIINQQRIKRNKKTVRRILGVVEIGGSGENITKTELFKYDGISDS
VVKTGICMWEEGVCQIAGITRDELMDDRINRKKVLKYMVNNNINDIRKVGDVLKQYQENPENVLKNILE

Nucleotide


Download         Length: 1650 bp        

>NTDB_id=65037 MMKA1_RS00240 WP_146777879.1 51933..53582(-) (epdL) [Methanococcus maripaludis KA1]
ATGGGGCTTTTTGACAGAATCCAAAGCAGAGATTCCAATCCATCTGTCGCTAAAAAAAATAATGTATCTGAAAAAGTATC
TGAAACCCCCAATATACTTGATACTTCTGAAAAAGTCAAAAAACCCGAAATAAAAGTGGGTTTTTCAGTGAATGAACGGG
CAAAACAGCCAGTAGAAGAATTTGAAAGAGATTCTACAAGCTCAATACTCGATAAATACTTTGTAAAAGTTGATGACATT
GATTTTGATGTAATTATTGAAAAAGAAAATGGTGTCACACTATACAAGATTCCAGAAATCACTCTTATGAATACAGCTCT
TGCAAAATTTTCAGATATGGATATTAAAACAATAAAAGCGGAACTTTCAGAATCTACTCTTCAAAAATTAGGGCAGATTC
AAGGATACCTTAAAAATTATTCGGAAAAAAATAATTTACATTTAAGAGACATAGAAATACTCCATTTATCACACTATTTT
TACTTAATAATTGGAAAATTAGGGCTTTTAGAAATTCCATTAAATGATAGCAAATTAGAAGAAGTAATGGTAAATGGTGT
TGAATCACCTTCTTTCGTATTTCACAGAAAATACCAGATGTGTGAAACAAATATTAGGCTTGATAGACACGAAGCAACGA
GGGTTGTTGAAAGTATAGCTTATCTTGCAGGCAGGACTATTGATTCAAGAACTCCAATGCTTGATGCATTTTTACCAGAT
GGAAGCAGGGTTAACGCTACAATGAGTGATGTTACATTGGGTGGAAATACAATTACCATTCGTAAATTTAGTGAAGATCC
ATTAACTATTGTTGATTTGATTAATTTTGGAACTTTTGATCTAGAACTTGCAGCATTCCTCTGGCAGGCTGTTGAAGGGT
ACTTCGGTTCAAAACCTGCAAACACCTTGATTGTAGGGGGTACTGGTTCAGGTAAAACAACTACTTTGAACGTTGTTTCC
ATGTTTTCAATGTATAATGATAGGATAATAACAGTTGAAGATACGCCAGAATTACAGATTCCACTAACGCACCTGATAAA
AATGATTACAAGACCTGGAAGACCAGGTATTCAGGGTTATGAAATCACGATGGATGATTTGATCAAGAACTCCTTAAGGA
TGAGGCCTGACAGGATATTTGTAGGGGAAGTTAGGGGTAGTGAAGCCCATTCGTTACTTGTTGCTATGAACACCGGGCAC
GATGGATGTTCCGGAACTCTGCACGCAAACAGCGCAGATGAAGCACTCATTAGGTTAATAAACCCACCTATGAACGTTCC
AAAAGTTATGATGTCTTCAGTTGATTTTATCATAAACCAGCAGCGTATTAAACGTAATAAAAAAACTGTTAGAAGGATCC
TCGGTGTTGTTGAAATCGGGGGAAGTGGGGAAAATATTACAAAAACTGAGCTCTTTAAATACGATGGAATAAGCGACAGT
GTTGTAAAAACAGGAATTTGTATGTGGGAAGAAGGCGTGTGCCAGATTGCAGGTATCACAAGAGATGAATTAATGGACGA
TAGAATCAATAGAAAGAAAGTACTAAAATATATGGTGAACAACAATATTAATGATATTAGAAAAGTAGGGGATGTACTTA
AGCAATATCAGGAAAATCCAGAAAATGTCTTGAAAAACATTCTGGAATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(176-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z5PCI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanococcus maripaludis strain DSM 2067

98.361

100

0.984

Multiple sequence alignment