Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   MMKA1_RS00230 Genome accession   NZ_AP011526
Coordinates   49962..50858 (-) Length   298 a.a.
NCBI ID   WP_146777877.1    Uniprot ID   A0A2Z5PPU5
Organism   Methanococcus maripaludis KA1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 44962..55858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMKA1_RS00205 (MMKA1_00350) - 45507..46733 (+) 1227 WP_011169977.1 AAA family ATPase -
  MMKA1_RS00210 (MMKA1_00360) mptA 46754..47701 (+) 948 WP_146777875.1 GTP cyclohydrolase MptA -
  MMKA1_RS00215 (MMKA1_00370) - 47727..48776 (+) 1050 WP_146777876.1 ATP-grasp domain-containing protein -
  MMKA1_RS00220 (MMKA1_00380) tfe 48780..49337 (+) 558 WP_011169980.1 transcription factor E -
  MMKA1_RS00225 (MMKA1_00390) - 49348..49935 (+) 588 WP_119720489.1 HDIG domain-containing metalloprotein -
  MMKA1_RS00230 (MMKA1_00400) epdJ 49962..50858 (-) 897 WP_146777877.1 type II secretion system F family protein Machinery gene
  MMKA1_RS00235 (MMKA1_00410) epdK 50863..51921 (-) 1059 WP_146777878.1 type II secretion system F family protein Machinery gene
  MMKA1_RS00240 (MMKA1_00420) epdL 51933..53582 (-) 1650 WP_146777879.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  MMKA1_RS00245 (MMKA1_00430) - 53592..54611 (-) 1020 WP_119720493.1 transcription initiation factor IIB -
  MMKA1_RS00250 (MMKA1_00440) - 54630..54911 (-) 282 WP_011169986.1 Gar1/Naf1 family protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 32758.38 Da        Isoelectric Point: 9.9536

>NTDB_id=65035 MMKA1_RS00230 WP_146777877.1 49962..50858(-) (epdJ) [Methanococcus maripaludis KA1]
MDAKKYLDHVYHVLIVRNIKILKKTGRKLDERVFIGILLVITILPILLKIFLGFTLKTTLILTFVYLGSVLSLPTIMYES
KMDKFDKNISKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKIVTLMTERKLSFEDAMILVSNSLDSKIFRQVGR
LIIENRKYGGELADTLKKLAKTLDDLQNLKSQLLSVTANGLAVGLIILCGVIPATAGLIGGYLTVISQLAPTMPSVEASQ
ISKAIETIQMGSGLFGLFFAVPLFGLKVNRMIITCAVCMTFAIGTFYAVLRLTGLLFA

Nucleotide


Download         Length: 897 bp        

>NTDB_id=65035 MMKA1_RS00230 WP_146777877.1 49962..50858(-) (epdJ) [Methanococcus maripaludis KA1]
ATGGATGCCAAAAAATACTTAGATCATGTATATCATGTTTTAATTGTACGAAATATTAAGATATTAAAAAAAACAGGTAG
AAAACTTGATGAACGAGTTTTTATCGGAATATTATTGGTTATAACGATTTTACCAATATTGTTAAAAATATTTTTAGGTT
TCACCTTAAAAACTACCTTGATTTTAACTTTTGTATATTTAGGATCCGTTCTTTCACTCCCGACGATTATGTATGAATCT
AAAATGGATAAATTCGACAAAAATATATCTAAAGCATTATACGTCATGGTTTTGTCACTCGATTCCGGACGTTCTGTTGT
TGAAGCAATTAATGAAGTTATAAGAAGTGGAATTCCTGAAGTGGACGTAGTTTTTTCAAAAATTGTTACATTAATGACTG
AAAGAAAATTGAGTTTTGAAGATGCAATGATACTTGTTTCAAATTCTCTTGATTCAAAGATATTCAGACAGGTTGGAAGG
TTAATCATTGAAAATAGAAAATATGGTGGAGAACTTGCAGACACCTTGAAAAAACTTGCAAAAACACTTGACGACCTTCA
AAATTTAAAATCCCAACTTTTAAGTGTCACTGCAAACGGTCTTGCAGTGGGCCTTATAATTCTCTGTGGTGTGATTCCTG
CAACTGCTGGTTTGATTGGGGGTTATTTAACAGTAATATCTCAGTTAGCACCAACAATGCCATCAGTTGAAGCTTCACAA
ATATCAAAAGCGATTGAAACGATACAGATGGGTTCTGGATTATTCGGGCTGTTTTTTGCAGTTCCATTATTTGGTTTAAA
AGTAAATAGAATGATAATTACGTGTGCGGTATGTATGACTTTTGCAATCGGCACATTTTATGCAGTATTGAGACTTACCG
GACTGTTATTTGCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(94-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z5PPU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanococcus maripaludis strain DSM 2067

99.664

100

0.997

Multiple sequence alignment