Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   L2Z14_RS16155 Genome accession   NZ_CP091360
Coordinates   3358545..3358955 (-) Length   136 a.a.
NCBI ID   WP_002036702.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB179-VUB     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3353545..3363955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z14_RS16125 (L2Z14_16125) - 3353631..3353900 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  L2Z14_RS16130 (L2Z14_16130) rapZ 3353897..3354748 (-) 852 WP_000821671.1 RNase adapter RapZ -
  L2Z14_RS16135 (L2Z14_16135) panC 3354771..3355619 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  L2Z14_RS16140 (L2Z14_16140) panB 3355623..3356432 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  L2Z14_RS16145 (L2Z14_16145) folK 3356478..3356960 (-) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  L2Z14_RS16150 (L2Z14_16150) pcnB 3356957..3358420 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  L2Z14_RS16155 (L2Z14_16155) comEA 3358545..3358955 (-) 411 WP_002036702.1 ComEA family DNA-binding protein Machinery gene
  L2Z14_RS16160 (L2Z14_16160) mazG 3358924..3359730 (-) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  L2Z14_RS16165 (L2Z14_16165) - 3359842..3360615 (+) 774 WP_226200545.1 SDR family oxidoreductase -
  L2Z14_RS16170 (L2Z14_16170) - 3360660..3362966 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15711.00 Da        Isoelectric Point: 10.3828

>NTDB_id=650328 L2Z14_RS16155 WP_002036702.1 3358545..3358955(-) (comEA) [Acinetobacter baumannii strain AB179-VUB]
MQYSMRFWKNKYFVLIILCLGVISPSIYAQSFDQNFQEWKVKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=650328 L2Z14_RS16155 WP_002036702.1 3358545..3358955(-) (comEA) [Acinetobacter baumannii strain AB179-VUB]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGAT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGTTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baumannii strain A118

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

45.946

81.618

0.375