Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG212_RS20935 Genome accession   NZ_CP107944
Coordinates   4885221..4885895 (-) Length   224 a.a.
NCBI ID   WP_326579726.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00391     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4880221..4890895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG212_RS20915 (OG212_20925) - 4881529..4881756 (+) 228 WP_326579719.1 hypothetical protein -
  OG212_RS20920 (OG212_20930) - 4881739..4882956 (-) 1218 WP_326579720.1 cytochrome P450 -
  OG212_RS20925 (OG212_20935) vraR 4883040..4883705 (-) 666 WP_326579722.1 response regulator transcription factor Regulator
  OG212_RS20930 (OG212_20940) - 4883702..4885054 (-) 1353 WP_328506511.1 histidine kinase -
  OG212_RS20935 (OG212_20945) vraR 4885221..4885895 (-) 675 WP_326579726.1 response regulator transcription factor Regulator
  OG212_RS20940 (OG212_20950) - 4885892..4887328 (-) 1437 WP_328506512.1 sensor histidine kinase -
  OG212_RS20945 (OG212_20955) - 4887339..4888601 (-) 1263 WP_328508150.1 acyltransferase -
  OG212_RS20950 (OG212_20960) - 4888882..4889790 (-) 909 WP_328508151.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24282.95 Da        Isoelectric Point: 5.3329

>NTDB_id=649795 OG212_RS20935 WP_326579726.1 4885221..4885895(-) (vraR) [Streptomyces sp. NBC_00391]
MTSSPIRVLIADDQQMVRQGFSVLLNTQPDIDVVGQAVHGLDAIDKVTELAPDVVLMDIRMPELGGIEATHRITTEHPHI
RVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVIAAGDALLAPGITRRLIAEFSRLGTTPRAPLKARVGDLT
ERETEVLSLIAQGLSNAEIAQRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPTGY

Nucleotide


Download         Length: 675 bp        

>NTDB_id=649795 OG212_RS20935 WP_326579726.1 4885221..4885895(-) (vraR) [Streptomyces sp. NBC_00391]
ATGACGAGCAGCCCCATCCGCGTACTGATCGCCGACGACCAGCAGATGGTCCGGCAGGGCTTCTCGGTGCTGCTCAACAC
TCAGCCCGACATCGACGTCGTCGGCCAGGCGGTGCACGGCCTCGACGCGATCGACAAGGTCACCGAACTCGCCCCGGATG
TCGTCCTGATGGACATCCGCATGCCCGAGCTCGGCGGCATCGAGGCCACCCACCGCATCACCACCGAGCACCCGCACATC
AGAGTCCTCGTCCTCACCACCTTCGACCTCGACGAGTACGTCTACGAGGCCCTGCGCGCCGGCGCGTCCGGCTTCCTCCT
CAAGGACGCCTCCGCCGACCAGCTCGCCGAGGCGGTACGGGTCATCGCGGCGGGCGACGCCCTGCTCGCACCCGGCATCA
CCCGCCGCCTCATCGCCGAGTTCTCCCGCCTCGGCACCACACCCCGTGCCCCCCTCAAGGCCCGCGTCGGTGATCTGACG
GAGCGGGAGACCGAGGTGCTCAGCCTGATCGCGCAGGGCCTGTCCAACGCCGAGATCGCCCAGCGTCTCGTCGTCGCCGA
ACAGACCGTGAAGACCCACGTGGGCCGCATCCTGGTCAAACTGGGCCTCCGCGACCGCACCCAGGCCGCGGTCTTCGCCT
ACGAATCGGGCCTGGTCCGCCCCACGGGCTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(159-213)

Response regulator receiver domain (Response_reg)

(8-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.651

95.982

0.429
  degU Bacillus subtilis subsp. subtilis str. 168

40.175

100

0.411