Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG212_RS20925 Genome accession   NZ_CP107944
Coordinates   4883040..4883705 (-) Length   221 a.a.
NCBI ID   WP_326579722.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00391     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4878040..4888705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG212_RS20905 (OG212_20915) - 4878449..4879357 (+) 909 WP_326579716.1 ABC transporter ATP-binding protein -
  OG212_RS20910 (OG212_20920) - 4879354..4880991 (+) 1638 WP_328506510.1 ABC transporter permease -
  OG212_RS20915 (OG212_20925) - 4881529..4881756 (+) 228 WP_326579719.1 hypothetical protein -
  OG212_RS20920 (OG212_20930) - 4881739..4882956 (-) 1218 WP_326579720.1 cytochrome P450 -
  OG212_RS20925 (OG212_20935) vraR 4883040..4883705 (-) 666 WP_326579722.1 response regulator transcription factor Regulator
  OG212_RS20930 (OG212_20940) - 4883702..4885054 (-) 1353 WP_328506511.1 histidine kinase -
  OG212_RS20935 (OG212_20945) vraR 4885221..4885895 (-) 675 WP_326579726.1 response regulator transcription factor Regulator
  OG212_RS20940 (OG212_20950) - 4885892..4887328 (-) 1437 WP_328506512.1 sensor histidine kinase -
  OG212_RS20945 (OG212_20955) - 4887339..4888601 (-) 1263 WP_328508150.1 acyltransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23810.44 Da        Isoelectric Point: 4.6426

>NTDB_id=649794 OG212_RS20925 WP_326579722.1 4883040..4883705(-) (vraR) [Streptomyces sp. NBC_00391]
MTIRVLIADDQMMVREGFSVLLGAMPDIEVVGEAVNGRDAVDRVRELSPDVVLMDIRMPELNGIEATREIVASDGGAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLITEFSKLAQSPRPSAATQLAYGELTD
RETEVLVLIAQGLSNSEMAERLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=649794 OG212_RS20925 WP_326579722.1 4883040..4883705(-) (vraR) [Streptomyces sp. NBC_00391]
ATGACGATCCGCGTGCTGATCGCCGACGACCAGATGATGGTCCGCGAGGGCTTCTCCGTGCTGCTCGGCGCCATGCCGGA
CATCGAGGTGGTCGGCGAGGCGGTGAACGGCCGGGACGCGGTCGACCGGGTCCGGGAGCTGTCGCCGGACGTCGTCCTGA
TGGACATCCGGATGCCCGAGCTGAACGGCATCGAGGCCACCCGGGAGATCGTGGCGTCGGACGGCGGGGCGAAGGTGCTG
GTCCTGACCACGTTCGACCTCGACGAGTACGTGTACCAGGCGCTGCGCGCGGGAGCCTCCGGCTTCCTCCTCAAGGACGC
CTCCGCCCGCCAACTGGCCGACGGTGTCAGGGTGGTGGCCGCCGGCGAGGCACTTCTCGCCCCGTCCGTCACCAAGCGTC
TGATCACGGAGTTCTCCAAGCTGGCCCAGTCTCCCCGCCCCTCGGCGGCCACCCAGCTGGCATACGGCGAACTCACCGAC
CGCGAGACCGAGGTCCTGGTCCTCATCGCCCAGGGCCTGTCCAACTCGGAGATGGCCGAGCGTCTGGTGGTCGCCGAGTC
CACGATCAAGACCCATGTGAGCCGGGTCCTGGTGAAGCTGGGCCTGCGCGACCGTACCCAGGCGGCCGTGTTCGCCTACG
AGGCCCGGCTGGTCACGCCCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.661

98.643

0.421
  degU Bacillus subtilis subsp. subtilis str. 168

41.935

98.19

0.412