Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS59_RS24315 Genome accession   NZ_CP107935
Coordinates   5599395..5600069 (+) Length   224 a.a.
NCBI ID   WP_328495519.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00414     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5594395..5605069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS59_RS24295 (OHS59_24305) - 5594398..5595264 (+) 867 WP_328495516.1 alpha/beta hydrolase -
  OHS59_RS24300 (OHS59_24310) - 5595551..5596573 (+) 1023 WP_328495517.1 alpha/beta hydrolase -
  OHS59_RS24305 (OHS59_24315) - 5596566..5597876 (+) 1311 WP_328495518.1 acyltransferase -
  OHS59_RS24310 (OHS59_24320) - 5598109..5599398 (+) 1290 WP_328499335.1 histidine kinase -
  OHS59_RS24315 (OHS59_24325) vraR 5599395..5600069 (+) 675 WP_328495519.1 response regulator transcription factor Regulator
  OHS59_RS24320 (OHS59_24330) - 5600209..5601555 (+) 1347 WP_328495520.1 histidine kinase -
  OHS59_RS24325 (OHS59_24335) vraR 5601552..5602217 (+) 666 WP_328495521.1 response regulator transcription factor Regulator
  OHS59_RS24330 (OHS59_24340) - 5602513..5603730 (+) 1218 WP_328495522.1 cytochrome P450 -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24224.98 Da        Isoelectric Point: 4.7187

>NTDB_id=649644 OHS59_RS24315 WP_328495519.1 5599395..5600069(+) (vraR) [Streptomyces sp. NBC_00414]
MTSGSIRVVIADDQQMVRQGFTVLLNTQPDIEVVGQAVDGLDAIAKVAELAPDVVLMDIRMPELGGIEATRRITCETPQI
RVLVLTTFDLDEYVYDALRAGASGFLLKDASADQLAEAVRIVAAGDALLAPGITRRLIAEFSRLGSAPRPPLKQRVGELT
ERETEVLALIAQGLSNAEIAERLFVAEQTVKTHVGRILVKLGLRDRTQAAVFAYECGLVRPTGY

Nucleotide


Download         Length: 675 bp        

>NTDB_id=649644 OHS59_RS24315 WP_328495519.1 5599395..5600069(+) (vraR) [Streptomyces sp. NBC_00414]
ATGACGAGCGGCAGCATCCGCGTTGTCATCGCCGACGATCAGCAGATGGTCCGGCAGGGTTTCACGGTGCTGCTCAACAC
CCAGCCGGACATCGAGGTGGTCGGTCAGGCGGTGGACGGCCTGGACGCGATCGCCAAGGTCGCCGAACTCGCCCCGGACG
TCGTCCTGATGGACATCCGCATGCCCGAACTCGGCGGCATCGAGGCCACCCGCCGCATCACCTGTGAGACCCCGCAGATC
AGAGTCCTGGTGCTGACCACCTTCGACCTCGACGAGTACGTGTACGACGCGCTGCGGGCGGGTGCCTCCGGGTTCCTGCT
GAAGGACGCGTCGGCCGACCAGCTCGCGGAGGCGGTCAGGATCGTGGCCGCCGGTGACGCGCTTCTCGCGCCGGGGATCA
CCCGTCGTCTCATCGCGGAGTTCTCCCGGCTGGGCTCCGCGCCCCGGCCCCCGCTCAAGCAGCGCGTCGGCGAGCTGACC
GAGCGCGAGACGGAGGTCCTCGCCCTCATCGCGCAGGGCCTGTCGAACGCGGAGATCGCCGAGCGGCTCTTCGTCGCCGA
GCAGACCGTGAAGACCCACGTGGGCCGCATCCTGGTGAAACTGGGTCTGCGGGACCGCACCCAGGCGGCGGTGTTCGCGT
ACGAGTGCGGGCTGGTGCGCCCCACCGGCTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(159-213)

Response regulator receiver domain (Response_reg)

(8-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.836

97.768

0.429
  degU Bacillus subtilis subsp. subtilis str. 168

42.411

100

0.424