Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   L2Z34_RS06155 Genome accession   NZ_CP091342
Coordinates   1263710..1264711 (-) Length   333 a.a.
NCBI ID   WP_000079200.1    Uniprot ID   A0A9P3CZV1
Organism   Acinetobacter baumannii strain AB224-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1258710..1269711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z34_RS06145 (L2Z34_06145) pilY1 1259029..1262883 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  L2Z34_RS06150 (L2Z34_06150) pilX 1262895..1263713 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2Z34_RS06155 (L2Z34_06155) pilW 1263710..1264711 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  L2Z34_RS06160 (L2Z34_06160) pilV 1264712..1265272 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  L2Z34_RS06165 (L2Z34_06165) fimU 1265266..1265739 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  L2Z34_RS06170 (L2Z34_06170) ispH 1265909..1266859 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z34_RS06175 (L2Z34_06175) gmk 1266982..1267611 (+) 630 WP_000015937.1 guanylate kinase -
  L2Z34_RS06180 (L2Z34_06180) rpoZ 1267684..1267962 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z34_RS06185 (L2Z34_06185) - 1268001..1268130 (+) 130 Protein_1197 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35829.53 Da        Isoelectric Point: 5.7207

>NTDB_id=649644 L2Z34_RS06155 WP_000079200.1 1263710..1264711(-) (pilW) [Acinetobacter baumannii strain AB224-VUB]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNYWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=649644 L2Z34_RS06155 WP_000079200.1 1263710..1264711(-) (pilW) [Acinetobacter baumannii strain AB224-VUB]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACTACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCGCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGCCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.7

100

0.997