Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS59_RS24325 Genome accession   NZ_CP107935
Coordinates   5601552..5602217 (+) Length   221 a.a.
NCBI ID   WP_328495521.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00414     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5596552..5607217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS59_RS24305 (OHS59_24315) - 5596566..5597876 (+) 1311 WP_328495518.1 acyltransferase -
  OHS59_RS24310 (OHS59_24320) - 5598109..5599398 (+) 1290 WP_328499335.1 histidine kinase -
  OHS59_RS24315 (OHS59_24325) vraR 5599395..5600069 (+) 675 WP_328495519.1 response regulator transcription factor Regulator
  OHS59_RS24320 (OHS59_24330) - 5600209..5601555 (+) 1347 WP_328495520.1 histidine kinase -
  OHS59_RS24325 (OHS59_24335) vraR 5601552..5602217 (+) 666 WP_328495521.1 response regulator transcription factor Regulator
  OHS59_RS24330 (OHS59_24340) - 5602513..5603730 (+) 1218 WP_328495522.1 cytochrome P450 -
  OHS59_RS24335 (OHS59_24345) - 5603853..5605487 (-) 1635 WP_328495523.1 ABC transporter permease -
  OHS59_RS24340 (OHS59_24350) - 5605484..5606404 (-) 921 WP_328495524.1 ABC transporter ATP-binding protein -
  OHS59_RS24345 (OHS59_24355) - 5606548..5607072 (+) 525 WP_328495525.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23821.47 Da        Isoelectric Point: 4.6608

>NTDB_id=649645 OHS59_RS24325 WP_328495521.1 5601552..5602217(+) (vraR) [Streptomyces sp. NBC_00414]
MTIRVVIADDQMMVREGFSVLLGAMRDIEVVGEAVNGREAVDRVRELAPDVVLMDIRMPEMNGIEATREIVAADGTAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASAQQLADGVRVVAAGEALLAPSVTKRLITEFSKISEEPRLSATAHAAYGDLTD
RETEVLVLIAQGLSNAEIAGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPA

Nucleotide


Download         Length: 666 bp        

>NTDB_id=649645 OHS59_RS24325 WP_328495521.1 5601552..5602217(+) (vraR) [Streptomyces sp. NBC_00414]
ATGACCATCCGGGTGGTGATCGCCGACGACCAGATGATGGTCCGTGAGGGATTCTCGGTACTGCTCGGCGCGATGCGGGA
CATCGAGGTCGTGGGCGAGGCGGTCAACGGCAGGGAGGCGGTCGACCGGGTCAGGGAGCTCGCGCCGGACGTCGTTCTGA
TGGACATCCGGATGCCCGAGATGAACGGCATCGAGGCGACGCGCGAGATCGTGGCGGCGGACGGCACGGCGAAGGTGCTC
GTGCTGACGACGTTCGACCTCGACGAGTACGTGTACCAGGCGCTGCGCGCCGGGGCGTCGGGCTTCCTCCTGAAGGACGC
CTCGGCCCAGCAGCTCGCGGACGGGGTGCGGGTGGTGGCGGCCGGTGAGGCACTGCTGGCGCCCTCGGTGACGAAGCGGC
TGATCACGGAGTTCTCGAAGATCTCCGAGGAACCCCGCCTGTCGGCGACCGCGCACGCGGCGTACGGGGACCTGACCGAC
CGGGAGACGGAGGTGCTGGTCCTCATCGCCCAGGGCCTGTCCAACGCGGAGATAGCCGGCCGCCTGGTCGTGGCCGAGTC
CACCATCAAGACCCACGTGAGCCGCATCCTGGTGAAACTCGGCCTACGAGACCGCACCCAGGCAGCGGTCTTCGCCTACG
AGGCCCGCCTGGTAACCCCAGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.037

98.643

0.434
  degU Bacillus subtilis subsp. subtilis str. 168

41.475

98.19

0.407