Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHS59_RS24475 Genome accession   NZ_CP107935
Coordinates   5633041..5633640 (+) Length   199 a.a.
NCBI ID   WP_189773119.1    Uniprot ID   A0ABZ1JI83
Organism   Streptomyces sp. NBC_00414     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5628041..5638640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS59_RS24460 (OHS59_24470) - 5629939..5631363 (+) 1425 WP_328495547.1 M20/M25/M40 family metallo-hydrolase -
  OHS59_RS24465 (OHS59_24475) - 5631528..5632274 (-) 747 WP_328495548.1 SLATT domain-containing protein -
  OHS59_RS24470 (OHS59_24480) - 5632586..5632930 (+) 345 WP_189773117.1 YbaB/EbfC family nucleoid-associated protein -
  OHS59_RS24475 (OHS59_24485) recR 5633041..5633640 (+) 600 WP_189773119.1 recombination mediator RecR Machinery gene
  OHS59_RS24480 (OHS59_24490) - 5633715..5634380 (+) 666 WP_328495549.1 DUF5063 domain-containing protein -
  OHS59_RS24485 (OHS59_24495) - 5634905..5636179 (+) 1275 WP_328495550.1 aspartate kinase -
  OHS59_RS24490 (OHS59_24500) - 5636208..5637257 (+) 1050 WP_328495551.1 aspartate-semialdehyde dehydrogenase -
  OHS59_RS24495 (OHS59_24505) - 5637652..5638320 (+) 669 WP_328495552.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21810.23 Da        Isoelectric Point: 4.9908

>NTDB_id=649646 OHS59_RS24475 WP_189773119.1 5633041..5633640(+) (recR) [Streptomyces sp. NBC_00414]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQCLMEVKAKVRFCATCGNVAQEELCNICRDPRRDLSV
ICVVEEPKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGAVTELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=649646 OHS59_RS24475 WP_189773119.1 5633041..5633640(+) (recR) [Streptomyces sp. NBC_00414]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGGCGACTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCGGAGCCGACGGACGTACGCCGGCTCGCGCAGTGCCTCATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCCACCTGCGGGAACGTGGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCTCTCGGTC
ATCTGTGTGGTCGAGGAGCCGAAGGACGTGGTCGCGGTCGAGCGGACCCGCGAGTTCCGGGGCAAGTACCACGTGCTCGG
CGGTGCGATCAGCCCGATCGAGGGCGTGGGACCGGACGACCTGCGCATAAGGGAACTGCTGGCGCGGCTCGCCGACGGCG
CGGTCACGGAGCTGATCCTGGCAACGGACCCGAACCTGGAGGGCGAGGCCACGGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGTCTGCGGGTCACCCGCCTCGCCAGCGGGCTGCCGGTGGGCGGTGACCTTGAGTACGCCGACGAGGTCACCCT
GGGCCGCGCCTTCGAGGGAAGGCGGCTGCTGGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452