Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   L2Z35_RS02255 Genome accession   NZ_CP091341
Coordinates   424112..424852 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain AB226-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419112..429852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z35_RS02235 (L2Z35_02235) aroB 419650..420732 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  L2Z35_RS02240 (L2Z35_02240) aroK 420748..421329 (-) 582 WP_202746620.1 shikimate kinase AroK -
  L2Z35_RS02245 (L2Z35_02245) pilQ 421341..423506 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  L2Z35_RS02250 (L2Z35_02250) pilP 423574..424101 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  L2Z35_RS02255 (L2Z35_02255) pilO 424112..424852 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  L2Z35_RS02260 (L2Z35_02260) pilN 424849..425490 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  L2Z35_RS02265 (L2Z35_02265) pilM 425490..426548 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  L2Z35_RS02270 (L2Z35_02270) ponA 426711..429266 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=649600 L2Z35_RS02255 WP_000076101.1 424112..424852(-) (pilO) [Acinetobacter baumannii strain AB226-VUB]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=649600 L2Z35_RS02255 WP_000076101.1 424112..424852(-) (pilO) [Acinetobacter baumannii strain AB226-VUB]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683